Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02292 ATGGGACGGAGCTACATCACAAGAATGAATTATTCTGGTTGCATTGCAAGTGCAGGGTGTTTCTGTACTGGCTCGCGCTCGTTTTCTCTCTCTTCTCATAACACTCCTCCCGAAACCCTTGATCTAAAAAAAGTACCAATGGGGAGGCCGTCCAAGGCTCAGGTTTCTAACAACTCAACCTCCGATGATGAGGAGGAGGACGTCGCCGCCGCTGACAACCACCAGATCGAAGATGATGATGAGGAACTTGAAGCTGTGGCGCAATCCGCTAGCTCTGACGAGGACGAGGATGATAATTCCCCAGACGAAGCCGCCGATGACGATGAAGACAATAAGCAGGATGAGAGTAGTGTTAATCCTGAAGTTGCAAAGCGTGAGAAGGCCAGGTTGAAAGAAATGCAACAGTTGAAGAAACAGAAGATTCAGGAGATACTGGATGCTCAAAACTCTACCATTGATGCTGATATGAATAATAAAGGAAAAGGCCGATTGAAGTTTCTCCTCCAGCAAACTGAACTGTTTGCCCATTTTGCCAAGGGTGATCAGTCTTCTCAAAAGAAGACTAAAGGAAGGGGTCGCCATGCATCAAAGGTCACCGAAGAAGAGGAAGATGAAGAATACCTGAAAGGGGAAGAAGATGGTCTATCCAACACCCGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTGATACGACTGTATGAGAATGGCATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTAGGCTACTTGCATGAGTTCAGAGGAATAGAAGGCCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGTCGCTTCTGTCCTGTTTTACGTGCTATAAAGTTCCTTGGCAACCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACGAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCCCATCGAATCAAGAACGAGAATTCTCTCCTGTCAAAAACAATGAGGCTATACAACACAAACTATCGTCTCCTCATTACTGGCACACCATTGCAGAATAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACAAGAAGTTGTTCAACAACTACACAAGGTCCTGCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAAAAAGGGTTGCCACCAAAAAAAGAAACCATTCTCAAGGTAGGCATGTCGCAAATGCAGAAACAGTACTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTTAATTCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCGATGCAACTACGAAAATGTTGTAATCACCCGTATCTCTTTCAAGGTGCTGAACCTGGTCCTCCCTTTACAACTGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTCTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATTTTCCGAGGATATCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAGAAATTTGTTTTCTTGTTGTCTACTCGGGCAGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACGATCGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCTGAACAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAAATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAAGATATTGACAGAATTATTGCCAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACAGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTGGAGCCACCAAGAAGAGAACGGAAACGCAATTATTCAGAGTCCGATTATTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCTAAAGAGCCACGCATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAATACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGCTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGAGATCCATTAACTGCTGAAGAATTAGAAGAGAAGGAACAGTTGCTTGAAGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGTCGAAGTGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTCAAGAGGAGGTCGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAGGCGAGAATATCCCGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAGAACAAAGGGAAGTTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGTATGTCTCCCTTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTCGCGGCCAAGAGCATGACCCCGTCGAAGCGTTCCATGCCTAGACAGACCGAGAGTCCCTCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAGGCTCGGGGAAGAAGAAAAAATAA 3321 0.4179 MGRSYITRMNYSGCIASAGCFCTGSRSFSLSSHNTPPETLDLKKVPMGRPSKAQVSNNSTSDDEEEDVAAADNHQIEDDDEELEAVAQSASSDEDEDDNSPDEAADDDEDNKQDESSVNPEVAKREKARLKEMQQLKKQKIQEILDAQNSTIDADMNNKGKGRLKFLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLSNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIEGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNSGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVKFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRSDIKSIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMPRQTESPSLKKRKQLTMDDYLGSGKKKK 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02292 1106 Pfam HAND 795 878 IPR015194 GO:0003677|GO:0006338|GO:0031491
Phco8g02292 1106 SUPERFAMILY Homeodomain-like 885 935 IPR009057 -
Phco8g02292 1106 CDD DEXHc_SMARCA1_SMARCA5 228 448 IPR044754 GO:0005524
Phco8g02292 1106 SMART helicmild6 562 646 IPR001650 -
Phco8g02292 1106 Gene3D - 970 1073 - -
Phco8g02292 1106 SMART sant 984 1045 IPR001005 -
Phco8g02292 1106 SMART sant 882 931 IPR001005 -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 28 125 - -
Phco8g02292 1106 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 687 IPR001650 -
Phco8g02292 1106 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 1053 1070 - -
Phco8g02292 1106 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 243 408 IPR014001 -
Phco8g02292 1106 SMART ultradead3 227 419 IPR014001 -
Phco8g02292 1106 FunFam ISWI chromatin-remodeling complex ATPase CHR11 452 744 - -
Phco8g02292 1106 Gene3D ISWI, HAND domain 783 881 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phco8g02292 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 729 IPR027417 -
Phco8g02292 1106 CDD SANT 885 929 IPR001005 -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 1082 1106 - -
Phco8g02292 1106 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 882 936 - -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 1053 1106 - -
Phco8g02292 1106 Pfam Helicase conserved C-terminal domain 534 646 IPR001650 -
Phco8g02292 1106 SUPERFAMILY Homeodomain-like 937 1059 IPR009057 -
Phco8g02292 1106 Gene3D - 452 744 IPR027417 -
Phco8g02292 1106 Gene3D - 882 936 - -
Phco8g02292 1106 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 138 1089 - -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 182 203 - -
Phco8g02292 1106 FunFam ISWI chromatin-remodeling complex ATPase CHR11 970 1074 - -
Phco8g02292 1106 Pfam SNF2-related domain 244 511 IPR000330 GO:0005524|GO:0140658
Phco8g02292 1106 Gene3D - 232 447 IPR038718 -
Phco8g02292 1106 MobiDBLite consensus disorder prediction 179 211 - -
Phco8g02292 1106 Coils Coil 123 150 - -
Phco8g02292 1106 FunFam ISWI chromatin-remodeling complex ATPase CHR11 783 881 - -
Phco8g02292 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 446 IPR027417 -
Phco8g02292 1106 Pfam SLIDE 939 1049 IPR015195 GO:0003677|GO:0005634|GO:0006338
Phco8g02292 1106 MobiDBLite consensus disorder prediction 60 114 - -
Phco8g02292 1106 ProSiteProfiles SANT domain profile. 881 933 IPR017884 -
Phco8g02292 1106 Coils Coil 1032 1066 - -
Phco8g02292 1106 CDD SF2_C_SNF 532 657 - -
Phco8g02292 1106 FunFam Chromatin-remodeling complex ATPase 232 447 - -
Phco8g02292 1106 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 794 884 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phco8g02292 1106 Gene3D iswi atpase 937 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02292 Phco-Chr8 24817104 24828693 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco8g02292 SNF2_N 1.4e-72 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02292 8 24817104 24828693 Phco8g02292 8 24817104 24828693 ECH