Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02282 ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCACGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACCGCGGAGAAGCGTGGTGGCTTGTGCCGGAGTGTGCCGCACCTGGAGACTCATCGTCATGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTATCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTAGCTGCGCGGAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCGGATGATATGTCCAGGGAAAGCAGTGCCCACATTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTACGATAGCCAACTGCCTCATGCAAGGGCAAAGATGACAAAAAGTTGCTCCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGTCCAAGGAGAATGCATTGTGTCATAGATACCATTCCTGCTTCTGCTATTGAACCAGAATGGGTAGCTCCTTCACAGACCAGTTATTCTGCTAGTAACATAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATCTAGAAAATTCCATATCTGGAGAGCAGAACAATAAAAAAGATGATGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGACAGTCAATGGACATGCTGAACCACAAGAGGATAACGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGTTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACGGTTGCTTGCGAATGA 1083 0.4654 MDDGLEQSWWANMPHELLREVLLRIESSEAKWPPRRSVVACAGVCRTWRLIVMEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGTQTYYLFISLSSALADDGKFLLAARKFRRPTCTDYIISLDADDMSRESSAHIGKLRSNFLGTKFTIYDSQLPHARAKMTKSCSTKLVNPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDTIPASAIEPEWVAPSQTSYSASNIGTSFPFFQTNSTHLENSISGEQNNKKDDVLVLRNKAARWHEQMQCWCLNFHGRVTIASVKNFQLAALTVNGHAEPQEDNVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02282 360 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Phco8g02282 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Phco8g02282 360 CDD F-box_AtTLP-like 10 54 - -
Phco8g02282 360 PANTHER TUBBY-RELATED 7 357 - -
Phco8g02282 360 FunFam Tubby-like F-box protein 67 360 - -
Phco8g02282 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Phco8g02282 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Phco8g02282 360 Pfam F-box domain 10 55 IPR001810 GO:0005515
Phco8g02282 360 Gene3D Tubby Protein; Chain A 68 360 IPR025659 -
Phco8g02282 360 Pfam Tub family 71 355 IPR000007 -
Phco8g02282 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02282 Phco-Chr8 24707159 24709719 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco8g02282 Tub 4.5e-107 CL0395