Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02224 ATGGTTTCTGGTTTGGTTGCCTTTGAGTTTATAGATCTCCTGTGGTTGGAAAATGACCCCAATGCAACCCTCAGGCAAAAAGAATGCATTGATGGATTCCTTGGTTCAACTGAGAAAGATGGTTCTAATGTCTTCATTGATTGGGTGAAAAGTAATCAGATAAAACAAAAATCGTTTGAAGCAAAGTTTTTTGTTTTGATCGGCAAAGAATCGTTTGAAGCAAAGTATTCTTTAGGCATGGATAACCATAATGTTTCTTCAGGCATTCATGCGTTTAAGCAGCAGAAGAAAAAGGCTGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAGAAAGCGAGTGAACTGTGCATTTTGTGCAATGTCAGTATGGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCAGTCACCCAGATTTGGAGGGCATTGTTGAAAGCTACCTGAAAGGTGACAAAGTGTTTCAACCACTGGAGTCAAGGGATAGATCAGTTTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAAGTTGGAGTTGGAAAAGAAGAATCTGAGAGAAACTGAAACTCTGGTTAATGGGTTTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTGAAAGTGAGTTGGAACAGTTTATGGTGTCTGTTTATGAGTTGAGGAGAAAATTAGCCGAAAGGGGTGGTGAATTGTTGATGCAATCAATGCTATAG 786 0.4008 MVSGLVAFEFIDLLWLENDPNATLRQKECIDGFLGSTEKDGSNVFIDWVKSNQIKQKSFEAKFFVLIGKESFEAKYSLGMDNHNVSSGIHAFKQQKKKAGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNVSMAIIVFSPAEKLFCFSHPDLEGIVESYLKGDKVFQPLESRDRSVSYEECNKQYEEAMKKLELEKKNLRETETLVNGFNRRWWEDPIDQMSESELEQFMVSVYELRRKLAERGGELLMQSML 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02224 261 PANTHER MADS BOX PROTEIN 101 248 - -
Phco8g02224 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 108 155 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 FunFam Agamous-like MADS-box protein AGL62 111 175 - -
Phco8g02224 261 Gene3D - 112 182 IPR036879 GO:0003677|GO:0046983
Phco8g02224 261 PRINTS MADS domain signature 121 136 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 PRINTS MADS domain signature 136 157 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 PRINTS MADS domain signature 101 121 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 ProSiteProfiles MADS-box domain profile. 99 159 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 Coils Coil 183 213 - -
Phco8g02224 261 SMART madsneu2 99 158 IPR002100 GO:0003677|GO:0046983
Phco8g02224 261 SUPERFAMILY SRF-like 100 170 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02224 Phco-Chr8 23798879 23803823 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco8g02224 SRF-TF 5.6e-23 No_clan