Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02184 ATGAATCTGAGCAACGGAAAGGGATCCATGTCTACGGTTACTACAACGGCGGTTATGAAATCCGGCGATGCCGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGACGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACTAAATGCAATCGAGCAGAGTCTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGAATGGATTTAAACTTTTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGAATGTAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTACCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGATGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCGGCTAATGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGACGAGGAGGAGGAAGCAGAAGATAGAGATGACACATCTACGTTAAAGAAACCGCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCCGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGATTGAGCGGAGTTTCTCAACACCAGAATAATTTGAACAACTCCTTTCTCGGCTCCCAAGAGGCAACGTTTGGGACAATTTCTTCAATTAACGGGATTGATCTTCAAACTCTTGCAGTTACTGGCCAGCTTCCTGCTCAAAGTCTAGCTACACTTCAAGCAGCAGGACTTGGTAGGTCAACTGCCAAAACTGGTGTACCAATGCCTCTCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAGGGCCAACAGCAACATTTAAGCAGTAGTAAACCAATGAATTTATTGCTTGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCGGCTTGAATATGCGAGTCAATGCATCTGCTACACAAGGCAACCCCTTAATGATGCAGATGCCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAAGACTGGTCCTCGTGTTCCCAGGCTTCCATCATCTTTAGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGCTTTCTGGGCAGAAATGGAATTGCTGGTAATAACAGAGGAACTGCTTATAATCCTGTTCCCCCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGCTCTGAAGTGTCCGTCAACAATAGTTTACCCCTTGGAAGCTCTCCTGGTATATCCAGTATCACAACAAAAGGCTCATTTCAAGAGGAAGTTACATCTGGAATTAAAGCATCTGGTGGATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCAGAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACGGTGCCTCCCATCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTGCATCAAGGCTTTTCTTCTACCCAGCAGACCGGCCAAACCAGAGATGCTACTTTAATTGGAAAAGCTATGTTCTCCCTGGGAGAAGGCTCAGAACAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCACTTCTTGTTGACAATTCAATAAGGGTCAAGGCTGAAAGAATTCCCGATGCAAGTTCCCAGACTAACCTCTTCCCTGACCATTATGTGCAGGAGGATCTGATGAGTGCACTTCTAAAGCAGCAAGAAGGCATGGGACCAGCTGAGAGTGAGTTCGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2040 0.4525 MNLSNGKGSMSTVTTTAVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAESALSLLRENKNGFDIVISDVHMPDMNGFKLLEHIGLEMDLPVIMMSADECKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGSQEATFGTISSINGIDLQTLAVTGQLPAQSLATLQAAGLGRSTAKTGVPMPLMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIAGLNMRVNASATQGNPLMMQMPQSQPRGQMLSEKTGPRVPRLPSSLGQPTVSNGISNGFLGRNGIAGNNRGTAYNPVPPNSSLLSFPMNQSSEVSVNNSLPLGSSPGISSITTKGSFQEEVTSGIKASGGFPSYDIFNELHHQKSHDWEITNPGLTYGASHHANPLQGNIDVSPSVLVHQGFSSTQQTGQTRDATLIGKAMFSLGEGSEQDNLQNAVQHLHPLLVDNSIRVKAERIPDASSQTNLFPDHYVQEDLMSALLKQQEGMGPAESEFEFDAYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02184 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Phco8g02184 679 SUPERFAMILY CheY-like 32 155 IPR011006 -
Phco8g02184 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Phco8g02184 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Phco8g02184 679 PIRSF RR_ARR_type-B 12 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco8g02184 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Phco8g02184 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Phco8g02184 679 CDD REC_typeB_ARR-like 35 149 - -
Phco8g02184 679 MobiDBLite consensus disorder prediction 189 210 - -
Phco8g02184 679 FunFam Two-component response regulator 209 272 - -
Phco8g02184 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 335 IPR045279 GO:0009736
Phco8g02184 679 Gene3D - 210 272 - -
Phco8g02184 679 MobiDBLite consensus disorder prediction 415 447 - -
Phco8g02184 679 FunFam Two-component response regulator 33 170 - -
Phco8g02184 679 MobiDBLite consensus disorder prediction 155 210 - -
Phco8g02184 679 SMART REC_2 33 145 IPR001789 GO:0000160
Phco8g02184 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Phco8g02184 679 Gene3D - 33 168 - -
Phco8g02184 679 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02184 Phco-Chr8 23430774 23434043 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco8g02184 Response_reg 9.8e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02184 8 23430774 23434043 Phco8g02184 8 23430774 23434043 ECH
Phco8g02184 8 23430774 23434043 Phco7g02987 7 48584943 48588209 PCT