Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02180 ATGCCAGTGATAAGTGGAAACTCCAATGCAATAAACAAATCTGCTGCGGCTGGTGCGCGTGTGTCTGCGTTGCGAGCGTCGTCGTTTCGATTCGATTCCCTCTCTCACTCACTTTTTCCCTCTCTCTTTCTCTCTCTCCCTGTCTCTCTGTCTCTCTCCCTCTCTCTCTCTCTCCATCTCTCTCACCACACCACACTCACTCTCCCACTCTGCTTCCTCTGCATGCTTCTTCCCTCGCTCTGGTTCCGCCAAATCGAGAGGTGTTCTCGGAATCCAATCGAATCTCAGATCTCGGAGATCAGAATGGTGGATCCATCTGAAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCAGGGAACAGTCCCAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGGGGCGGTCCTGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCCGGAAGAAGAAGAGAGCAATTCTGGGGATAAGCAAGGGGAGCAACGAGGATGGAAGAAAGGGGAAGAGGAGTGGCGGCGCCGGGGCCGCCGCAATAGGTGGCGGCGCGTTGGGGAGGGAGGTTTTGTTGCACCGATCGCATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCACTCTCGTATGGATCCGTTTATGCTTGA 711 0.5499 MPVISGNSNAINKSAAAGARVSALRASSFRFDSLSHSLFPSLFLSLPVSLSLSLSLSLHLSHHTTLTLPLCFLCMLLPSLWFRQIERCSRNPIESQISEIRMVDPSEKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNEDGRKGKRSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02180 236 ProSitePatterns GATA-type zinc finger domain. 136 161 IPR000679 GO:0006355|GO:0043565
Phco8g02180 236 SMART GATA_3 130 184 IPR000679 GO:0006355|GO:0043565
Phco8g02180 236 MobiDBLite consensus disorder prediction 112 136 - -
Phco8g02180 236 MobiDBLite consensus disorder prediction 99 136 - -
Phco8g02180 236 CDD ZnF_GATA 135 170 IPR000679 GO:0006355|GO:0043565
Phco8g02180 236 ProSiteProfiles GATA-type zinc finger domain profile. 130 166 IPR000679 GO:0006355|GO:0043565
Phco8g02180 236 PANTHER OS01G0976800 PROTEIN 108 236 - -
Phco8g02180 236 Gene3D - 127 211 IPR013088 GO:0006355|GO:0008270
Phco8g02180 236 Pfam GATA zinc finger 136 170 IPR000679 GO:0006355|GO:0043565
Phco8g02180 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02180 Phco-Chr8 23403267 23405575 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco8g02180 GATA 1.4e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02180 8 23403267 23405575 Phco8g02180 8 23403267 23405575 ECH