Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02170 ATGGCGAATAACTTGGCGGCGCAACTTGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGAGGAGCATTATGGAGGAAGCGAGAACCAGATGGCTTCGTCCCAATGAAATCCATGCCATGCTGTGTAATTACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGTAAGATGCTTAGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAGGATAACCCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGCATGGAACACATAGTCCTTGTTCATTATCGTGAAATACAAGAGATGCAAGGTTCTCCCGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCACGGGTTGTATTAGAAGAAATAGATTCAGGGACCACAACCACATATGCTGGTGACATGAGTGACAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACGCTTGAGTGGGATGACCTAGTGGATGCACATGATCATGATGCCTCTACCATGCCTAATGGAGACACTGTTCCATATTTTAATCAACAAGATCAAACTTTACTGAATGACAGTTTCAGCAATGTAGTCAACAATCCATCTGGAGAAATTTCTTCTTTTAATTGTCTTCCTCAGCCAATTGCCGGGAGCAACAGTGTTACTTACAATTTTTCAGAAAGTGCTAAGCTTCAGATGATGGGCAATCAAGTAAATCCAAATGAGCAGAGGAATAATACTGGTTCTTTAAGTGCTGATTCCTTGGACCCTTTGGTCAATGATAGATTGCAAAGTCAGGGAAGTTTTGGAATGTGGGTGAACCACATGATGTCTGATTCATCATGTTCAGTAGATGACCCAGCTCTTGAGTCACCAGTTTCATCCGTTCATGAATCATATTTGTCTCTGGTAGTGGATGGTCAGAAATTTTGTCAGCCAGAACAAGTATTTACTATCACTGATGTATCCCCTACATGGGTGTCTACCACTGAGAAATCAAAGGTCTTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTACCGGTGCTGGGTACCACCACATTCGCCAGGAATCGTGAATCTCTTCTTGAGTTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACAGCTGCAATGGAAGAGAGTAGCAATTGGGATGAGTTTCGACTACAAATGAGGCTTGCTTATTTGCTCTTTGATAAACAACTGAGCCTAGATGTTATCTCCTCTAAAGTATCACCTAATAGACTTAAGGAGGCTAGGCAATTCGCCCTCAGAACATCATTTATTTCGAATAGTTGGCAGTATTTAATGAAGTCAACTGAAGACTACCAGATTCCATTTTCAGAAGCAAAAGATGCTCTCTTTGGAATTGCATTGAAAAACAGACTAAGGGAATGGCTTTTGGAAAGAATTGTTCTAGGCTACAAGACTACTGAGTATGATTCACATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGCTCTGCTGTCTGCTGGGGCAAAGTCAAATTTGGTGACTGATCCTACGCAAAAAAATCCTGGTGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCAATTTAATGACATGAGCTTAGCTGGAAATATCAGCGGCACGTTAGAAAATAGCACAACTGATGCAATAAATTCTGCAAACCTTACTGATGACCAGCAGAACCTGAGGGATACACTGGCAGCTTACCGAACTGCTGCTGACGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATACAGCATGCCTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGTACATGGAAGATTCGTAAGGAATTTCTCCTCATGCGTCGTCAGGCTGTTAAAATTCAAGCTGCTTTCCGGTGCTTTCAACTGCGGAAGCATTATCGCCAAATTCTTTGGTCTGTAAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGGTTGAAGAGAAGGGGTTTTCGAGGGCTCCAGGTGAGAACCGTTGAGGTGGGAACCGGAGATCAGGATAAGGAAAGTGTTGTAGAGGAGGAATTCTTTCAGACTGGTAGGAGACAGGCTGAAGAACGTGTTGAGAGATCTGTGGTGAGGGTGCAGGCTATGTTCCGATCGAAGAAAGCACAAGAAGAGTATAGGAGGATGAAATTAGCTCTAGATGAAGCAAAGCTGGAACGGGAAATCGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2769 0.4225 MANNLAAQLVGSEIHGFHTLQDLDVRSIMEEARTRWLRPNEIHAMLCNYKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPRVVLEEIDSGTTTTYAGDMSDNVKDKSHELRLHEINTLEWDDLVDAHDHDASTMPNGDTVPYFNQQDQTLLNDSFSNVVNNPSGEISSFNCLPQPIAGSNSVTYNFSESAKLQMMGNQVNPNEQRNNTGSLSADSLDPLVNDRLQSQGSFGMWVNHMMSDSSCSVDDPALESPVSSVHESYLSLVVDGQKFCQPEQVFTITDVSPTWVSTTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLFLSFDGHKPISQVVNFEYRTLVLHDPTAAMEESSNWDEFRLQMRLAYLLFDKQLSLDVISSKVSPNRLKEARQFALRTSFISNSWQYLMKSTEDYQIPFSEAKDALFGIALKNRLREWLLERIVLGYKTTEYDSHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVAALLSAGAKSNLVTDPTQKNPGGCTAADLAYMRGHDGLAAYLSEKSLVQQFNDMSLAGNISGTLENSTTDAINSANLTDDQQNLRDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRQILWSVSVVEKAVLRWRLKRRGFRGLQVRTVEVGTGDQDKESVVEEEFFQTGRRQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDEAKLEREIEQLLSTEVDMELKA 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02170 922 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
Phco8g02170 922 Pfam Ankyrin repeats (3 copies) 553 632 IPR002110 GO:0005515
Phco8g02170 922 FunFam Calmodulin-binding transcription activator 5 363 459 - -
Phco8g02170 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 819 IPR027417 -
Phco8g02170 922 SUPERFAMILY Ankyrin repeat 551 667 IPR036770 -
Phco8g02170 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Phco8g02170 922 SMART ANK_2a 643 674 IPR002110 GO:0005515
Phco8g02170 922 SMART ANK_2a 604 633 IPR002110 GO:0005515
Phco8g02170 922 Gene3D - 536 674 IPR036770 -
Phco8g02170 922 FunFam calmodulin-binding transcription activator 5 534 674 - -
Phco8g02170 922 Gene3D - 765 815 - -
Phco8g02170 922 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Phco8g02170 922 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Phco8g02170 922 Pfam IQ calmodulin-binding motif 771 788 IPR000048 GO:0005515
Phco8g02170 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 899 - -
Phco8g02170 922 Coils Coil 885 921 - -
Phco8g02170 922 SUPERFAMILY E set domains 368 455 IPR014756 -
Phco8g02170 922 Gene3D Immunoglobulins 361 457 IPR013783 -
Phco8g02170 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Phco8g02170 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Phco8g02170 922 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Phco8g02170 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Phco8g02170 922 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Phco8g02170 922 ProSiteProfiles IQ motif profile. 791 819 IPR000048 GO:0005515
Phco8g02170 922 SMART iq_5 871 893 IPR000048 GO:0005515
Phco8g02170 922 SMART iq_5 790 812 IPR000048 GO:0005515
Phco8g02170 922 SMART iq_5 767 789 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02170 Phco-Chr8 23246570 23253403 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco8g02170 CG-1 2.2e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02170 8 23246570 23253403 Phco8g02170 8 23246570 23253403 ECH
Phco8g02170 8 23246570 23253403 Phco7g03001 7 48706803 48718920 PCT