Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02119 ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGACCATGACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTTGACATCATGCCACCTCTTCCACCACCACCATCTTCATCTTTCTCCCACGATCCAAAAGCTCCAAACTTTGCCTTCCTGGACTTGCTGGCTGTCCCTGATTATACCCCTTCCTTATTCGACTGGCCCCAAAACACCGCCGTCACCTCACCCCCACCGCCACCACCCCCCACCCAAATCACCCACGCGCTTCCCTCGCCTGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCGCCGTCTCCAAACTACTCCTCGATTTCCTCCTCGTCGAATGAGGCCGCTGCTGCCGCCGCCAACAAAGCAACTGGAAATGAAGATGAAGCGGAGGAGGATGAAACGACAACAGATGCAGCAGGCAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCTGAAGCCAAAAAAGAAGCACCAAAAGAAGCCAAGAGAACCAAGATTTGCGTTCATGACGAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTTCGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGTGTGCTCGGACCCACCAGTGGACTCTTTATGCTGCCCCAACAACACCAACAGTTTCGTCATGACCAAGCACAAGCACAAGCTCAAGCTCAAGCTCAAGTAGCAATGTTATACAACTCCACCACCACCACCACCTCATCTTCATCATCACATTTGAATGTTGTTAACTCAGCTACTTGTGTAAACAACTATGTCAATGCGTCGTCGTTGAGTGGGTTCTTTCAGAGCCAAGAGAATGAGCGAGGTTTTGCGCCATCTAGGATGGGAGGTCCTCATCAGGGTTTGTTCAATGGGCTTCTTCAGGACATTGTGCCAACGCAGATGATGAGTGAAGAGAGGGGAGATCGTGTGTAG 1203 0.5278 MEEKREKEANSKSSSTMANSVAFSDEIPNMTMTMSFPFSPAFSTIFDIMPPLPPPPSSSFSHDPKAPNFAFLDLLAVPDYTPSLFDWPQNTAVTSPPPPPPPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEAEEDETTTDAAGKGEDQDQDKSKNQLKPKKKHQKKPREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPSVVVTTYEGQHTHPCPATSRASLGFLHSEPSVLGPTSGLFMLPQQHQQFRHDQAQAQAQAQAQVAMLYNSTTTTTSSSSSHLNVVNSATCVNNYVNASSLSGFFQSQENERGFAPSRMGGPHQGLFNGLLQDIVPTQMMSEERGDRV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02119 400 SUPERFAMILY WRKY DNA-binding domain 201 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco8g02119 400 SMART WRKY_cls 209 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g02119 400 MobiDBLite consensus disorder prediction 108 147 - -
Phco8g02119 400 FunFam WRKY transcription factor 57 195 269 - -
Phco8g02119 400 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 116 315 IPR044810 GO:0003700
Phco8g02119 400 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g02119 400 MobiDBLite consensus disorder prediction 92 107 - -
Phco8g02119 400 Gene3D WRKY domain 195 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco8g02119 400 ProSiteProfiles WRKY domain profile. 204 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g02119 400 MobiDBLite consensus disorder prediction 164 182 - -
Phco8g02119 400 MobiDBLite consensus disorder prediction 88 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02119 Phco-Chr8 22634358 22636127 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco8g02119 WRKY 1.3e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02119 8 22634358 22636127 Phco8g02119 8 22634358 22636127 ECH
Phco8g02119 8 22634358 22636127 Phco4g01594 4 15192586 15195738 PCT
Phco11g01159 11 8658001 8661049 Phco8g02119 8 22634358 22636127 PCT