Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02097 ATGGATGAAAAAGGAAGAAGAACTAGCAACACCCTTTTGAGTGAGGACGAGATGGACCTTCGAAGAGGCCCCTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCTGGACTGAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTCAACTACCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAGGAACAACTTTTGATCCTGGAACTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAGAACTATTGGAGAACTCGTGTTCAAAAGCATGCCAAACAACTCAAATGTGACGTGAACAGCAAACAATTCAAGGACACCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCCTCAGTCACCACCAACAAAGCATACACCTCTGAGAACAACCTTAAAAACAACGAAATAGAGGTTCATAATCTCAAGGACAAAATGGGATTAATGGATCTTTCAGCTATGAACAGTGACTTTGTGGGTTCCTATGTCATGCAAAGTCACACTCCAGAGAATAGTAGCACAGCTTTGTCATCATCAGACTCATTCGGGACTCAAGTCTCAACAAAATCTGATCTCACCGATTATTACAGTGTTCCGGTTAGCAGAAACAATAATAACACTAATCCTGCAGATTATTATCAACCCTCTCAAACCAGTTACTCCAATTGCATCACAAGCCCATCTGGGTTTTTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACCTGCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTTGAAAACATGTTGTTCCTAGAGCAACATCTCATGAATGACAACATGTGA 939 0.4494 MDEKGRRTSNTLLSEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAATASVTTNKAYTSENNLKNNEIEVHNLKDKMGLMDLSAMNSDFVGSYVMQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSVPVSRNNNNTNPADYYQPSQTSYSNCITSPSGFFPQGLDFQSLDPWNLQNGDSSDNFWNVENMLFLEQHLMNDNM 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02097 312 Gene3D - 19 75 - -
Phco8g02097 312 Gene3D - 79 142 - -
Phco8g02097 312 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Phco8g02097 312 CDD SANT 24 69 IPR001005 -
Phco8g02097 312 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Phco8g02097 312 FunFam MYB transcription factor 79 142 - -
Phco8g02097 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 234 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco8g02097 312 CDD SANT 95 118 IPR001005 -
Phco8g02097 312 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Phco8g02097 312 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Phco8g02097 312 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Phco8g02097 312 FunFam Myb transcription factor 22 74 - -
Phco8g02097 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Phco8g02097 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Phco8g02097 312 SMART sant 74 122 IPR001005 -
Phco8g02097 312 SMART sant 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02097 Phco-Chr8 22416207 22417881 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g02097 Myb_DNA-binding 1.7e-14 CL0123