Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02080 ATGGCTGAGACCACAAAATACATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGCAAGAGGCAGCACATCGTTGGCTTCGACCCGTTGAAATATGTGAGATACTTCGCAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATTAGGCCACCAGCTGGATCACTATTCTTGTTCAATCGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAAAAAGATGGGAAAACCGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTATTATGCCCATGGAGAGGATAATGAAAATTTCCAACGGAGAAGTTTTTGGATGCTTGACGAGCACTTACAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGCTGCAATTCTGGCATCTCACATTTTCCGATAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAAAATAAACACACCAATATCTGTAGTACAAACATCTTTCACATCAAGTGCAAATAAAGTTGATCAGAATGGACACTCTTCAGAGAACGAGGATGTCAATTCAAAAGATGGTCCTCTAGCCTCCTCTCATGCTCAGCCTATCAGCAATTCCATAATTCACAGTGCACCTTCGTTTACACATGAAGTTACTGGTTTTTCTGAGTTGTTGAGGAACCCCTTGATTTCAACATGGTCATCTACTTTCCCTAGCTATTCTCCTGGTACTGTCTTGTCTCCCTGGACGTTAATTCAGAATTCTAGCAGAAACACAACTTATATGCATGATGAAAGACATCATATTGAAGGATCTGTTGAGGGCTCAGAAGCTGACTTCATTGTTCATAAGCAAAACAATACTAAGTTAGATGCTGCTAACAGAATGCAAGATGGTGTAATTTTCAGAGATAGGCTCGTCACTGACATGTACATCCAACCAGTTGAAGAAAATTTACTGACTGTTGAGCAGGTGCAAAACGAGGATGGTTTAGACACATTCCGTGCTCACTTATATGATCATAATGATCATCCAATTGTTGCAACTACTAAAGCGCAAGTTGAACAGAAAGTTAAAGGTGGTGGTTCAGACAACGATGAATCAAAACGGGTTGAATCTGGGGAACTGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGAGGAGGCTGTGAAAATTCTTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACACTTGGTGCTGATAACGAGGATAAGGAGGTATCTAGTGTGCGAGACATACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTCGGAAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCAGCAGAAGCTTTAACAGATAATGTGATACGGTGTCAAACTCCTTTGCACTCACCTGGTCGTGTACCATTCTATGTTACCTGCAGTAATAGGCTAGCTTGCAGTGAGATCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTCCGACTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGCTTGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCACGAGAGATGGTAGTGGAGTTTTTAAAGAAACTTTCCAGCAGATTGATGGAATTGATCATATAAACCCTAGAGATATACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGTTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCATTAGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCCCCAGGTGTGGTTGAGGATCCAACGTCAGCACTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGACTAATCAACTATCTGTACTGACTGTCAAGAAAAATGAGACTGGTAACATTGCCACAACCATAGCAGCTGACAGTGCTTTTCATTCTGCTGAAAATGACTCATCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCCCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTTTGTCAGAGACAATTTGCCAAAAGTAGAAGTGATATTTCAGACTCAGTACTTGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAAGATGGGTCATTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGGTAGCCAACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCGATTCTTCGTTGGAGACGGAAAGGAGATGGTCTGCGAGGATTCCGAGGAGGGCAGCCAGTTGGCGTTGATGAGTATGACTTTCTTAGCATTGGGAGGAGACAGAAATCAGAAGATGTAAAGAAAGCTCTGGATAGAGTCAAGTCCATGGTTCGCAACCCAGATGCAAGGGATCAGTATATGAGGCTCATCATGAAATATCAAAAGTTTAAGATTGATGATAGCGGAAGCAGTCAATCACAGCATGTCGATTAG 2997 0.4114 MAETTKYIPNSQLELEEILQEAAHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFNRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSFWMLDEHLQHVVLVHYREIKEGCNSGISHFPIVPVTLVGSSQNSSVLSSTKINTPISVVQTSFTSSANKVDQNGHSSENEDVNSKDGPLASSHAQPISNSIIHSAPSFTHEVTGFSELLRNPLISTWSSTFPSYSPGTVLSPWTLIQNSSRNTTYMHDERHHIEGSVEGSEADFIVHKQNNTKLDAANRMQDGVIFRDRLVTDMYIQPVEENLLTVEQVQNEDGLDTFRAHLYDHNDHPIVATTKAQVEQKVKGGGSDNDESKRVESGELKKLDSFGRWMDKEIGGGCENSLMASDSGNYWSTLGADNEDKEVSSVRDIQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEALTDNVIRCQTPLHSPGRVPFYVTCSNRLACSEIREFQFDEHPTKFLGPLGIKISPEVEVRLQMRLLKLVDLGPDNKCLKCSVSGCEKCKLKGIMYSTRDGSGVFKETFQQIDGIDHINPRDILFQRLMRDKLYEWLIYKVHEGGKGSHVLDDEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGVVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLTNQLSVLTVKKNETGNIATTIAADSAFHSAENDSSNLTMDEQHYLKESLAVFRKSAHAAASILAAFRARSFCQRQFAKSRSDISDSVLDIVADSLSKVQKMGHFEDYLHFAALKIQKRYRGWKGRKDFLKVANRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGDGLRGFRGGQPVGVDEYDFLSIGRRQKSEDVKKALDRVKSMVRNPDARDQYMRLIMKYQKFKIDDSGSSQSQHVD 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02080 998 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 984 - -
Phco8g02080 998 Gene3D - 857 906 - -
Phco8g02080 998 MobiDBLite consensus disorder prediction 183 210 - -
Phco8g02080 998 ProSiteProfiles IQ motif profile. 859 888 IPR000048 GO:0005515
Phco8g02080 998 SUPERFAMILY E set domains 454 539 IPR014756 -
Phco8g02080 998 CDD IPT 453 539 - -
Phco8g02080 998 FunFam Calmodulin-binding transcription activator 2 447 544 - -
Phco8g02080 998 SUPERFAMILY Ankyrin repeat 644 749 IPR036770 -
Phco8g02080 998 FunFam Calmodulin-binding transcription activator 2 858 906 - -
Phco8g02080 998 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Phco8g02080 998 Gene3D - 626 791 IPR036770 -
Phco8g02080 998 Gene3D Immunoglobulins 447 545 IPR013783 -
Phco8g02080 998 SMART CG_1_2 18 136 IPR005559 GO:0003677
Phco8g02080 998 SMART iq_5 858 880 IPR000048 GO:0005515
Phco8g02080 998 SMART iq_5 881 903 IPR000048 GO:0005515
Phco8g02080 998 Pfam IPT/TIG domain 454 532 IPR002909 -
Phco8g02080 998 ProSiteProfiles IQ motif profile. 883 910 IPR000048 GO:0005515
Phco8g02080 998 SMART ANK_2a 687 716 IPR002110 GO:0005515
Phco8g02080 998 SMART ANK_2a 726 756 IPR002110 GO:0005515
Phco8g02080 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 909 IPR027417 -
Phco8g02080 998 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Phco8g02080 998 Pfam IQ calmodulin-binding motif 886 903 IPR000048 GO:0005515
Phco8g02080 998 Pfam IQ calmodulin-binding motif 862 879 IPR000048 GO:0005515
Phco8g02080 998 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02080 Phco-Chr8 22145205 22152934 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco8g02080 CG-1 9e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02080 8 22145205 22152934 Phco8g02080 8 22145205 22152934 ECH