Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02069 ATGACAGTTTGCAGTTTTTTCAGAACTGGTGGTGGGGTTGTAAATTGGACTTTGTTGCAGCACATTAGATTTTCATCCATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTAGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGACGGTGATCTTTTCACTGCTCAGCCACTCAATTCAGTGCCATCAGATTGTAGGAGCCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCAAAAAAGACCAATCCTTCCAACGATTTGTCTTCTTCTGCAATCAACCCTGGTAAGGGAAAGAAGGAATTGGAGAAAAGGAGGAGGGGTGTAATAGGGGAAGGTGAAGGGGAGGGACTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTTACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTACTGCTGCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTAGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGATGGCCATAATAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGCTCTCTTGACGATGGAAGTGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACCTGGCAAGTCTGGCTGCTCCAAATAATGGTAGAACTTTAGCCTCCTTATTGGAGGACTCTAAAGGTTTGTTAAATGCTGGGACACCTGGAGGTGCTCATGAAGAGCCCAACCTTAATTCAAACACTCCTGAAGCTTTCAGACGGCCTGGTTCTTCCATTAAGATTGATGATGGCTTCATCAGTCAGGACCCTCCAATATCCATGGCACAGTGTGAAACAGGGCCTACTAATGGGGGGACACAAGAATGTATACCTTCAGGAGATGGTGGAGTAGAAAATTCAAAATCACCTCCAGGAGCACCATTCTCAAGTATAAGTCAATCAAGGGGAAGTCTTCCATGCCAATTAACTGCAGTGGAGACTACACTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAATGTATACAGTGATATGCAGAACACTGTTGAGAATCATAAGAAGCCTTATCATCATGTGGCATCTCAGATGGGATCTATTGATCTTCCCTCATGGTTGCAATGTGATTCTCTTAAATCAAGTCCTCCACAGACGAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGACCGCAGATTCTCAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTGGCGAATCAAATGATACATTTTGGAGGACAGGATGGGTATTTGCAAGGGTGCAGCAATCTTTGGCTTTTCTGTGTAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCCCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCCAGGGCTCACTTTATTGTGAAAGGCTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACATGCAAGTTGTCATGATTTGATTGGTGGAGCTGATAAATCCATTCAGCATCTCAACTTCACTTGTCATATACCAAATGTGACTGGGAGGGGTTTTATTGAGGTGGAAGACCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAAAAAGAAGTCTGTTCAGAGATCTGCAAATTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAACAAATGGAAGAAAAGACTCAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCATGGCTCCTATCCATGATCTCTTCCAATTTAATCGGATCTCGTGGCTTGTTGACTTCTCTATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGATATTATATTTGAGGGCGGTGTTGATGCAGGAGAACATGCCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTGATGAGAAACAGTAGACCTATGGTAGAACTACTGTTAAGATTTGTGCCAGTTAAAACATCAGATGCTGCTGACAGTGAAGTGAAGCAAGTTGAAAAGGCTACTCACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGAGAACGTGTTGGATGCATTGACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGGCCGAGACAGTACAGGTTTGACTCCCAACGACTACGCATGCCTTAGGGGCTATTACTCTTACGTTCAACTCGTTCAGAACAAGACCAACAAAAAAGGTGAAAGACTACATGTGGTTGATATACCTGGCGCAGTTGTAATCAGTGGTAACACAAAGCAGAAGCTATCAGATGGACATATGACGGGTAAAGTTTGTAGTTTACAGACTGAGAAGATTCAAAGCACAGAAATGGCAAGTGAATGCAGGGTATGCCAGCAGAAGTTGGCTTATGGTGGCATGAGAACTGCAGTGGTTTATAGGCCAGTCTTGCTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTGTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGGACAATATAA 3198 0.4384 MTVCSFFRTGGGVVNWTLLQHIRFSSMEAEFGGKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKTNPSNDLSSSAINPGKGKKELEKRRRGVIGEGEGEGLNDEGGSLSLNLGGYGYPFMVEGEEKSGKKTKVIGTTTAAATTSNRAVCQVQDCTADLGNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLDGHNRRRRKTHPDVTVVNEGSLDDGSGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNGRTLASLLEDSKGLLNAGTPGGAHEEPNLNSNTPEAFRRPGSSIKIDDGFISQDPPISMAQCETGPTNGGTQECIPSGDGGVENSKSPPGAPFSSISQSRGSLPCQLTAVETTLRRNNLNNVDLNNVYSDMQNTVENHKKPYHHVASQMGSIDLPSWLQCDSLKSSPPQTSRNSDSTSNQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRPQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLGESNDTFWRTGWVFARVQQSLAFLCNGQVVLDVPLCLKSPHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYLVHASCHDLIGGADKSIQHLNFTCHIPNVTGRGFIEVEDHGLSSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQQMEEKTQALHFLQEMGWLLHRSRVKVRLGPMAPIHDLFQFNRISWLVDFSMDHGWCAVMKKLLDIIFEGGVDAGEHASIELALLDMSLLHKAVMRNSRPMVELLLRFVPVKTSDAADSEVKQVEKATHRFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGMVGIEVWKSGRDSTGLTPNDYACLRGYYSYVQLVQNKTNKKGERLHVVDIPGAVVISGNTKQKLSDGHMTGKVCSLQTEKIQSTEMASECRVCQQKLAYGGMRTAVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02069 1065 SUPERFAMILY Ankyrin repeat 832 949 IPR036770 -
Phco8g02069 1065 MobiDBLite consensus disorder prediction 379 393 - -
Phco8g02069 1065 Gene3D - 175 245 IPR036893 GO:0003677|GO:0005634
Phco8g02069 1065 MobiDBLite consensus disorder prediction 407 421 - -
Phco8g02069 1065 MobiDBLite consensus disorder prediction 482 510 - -
Phco8g02069 1065 MobiDBLite consensus disorder prediction 335 365 - -
Phco8g02069 1065 MobiDBLite consensus disorder prediction 82 122 - -
Phco8g02069 1065 Gene3D - 737 962 IPR036770 -
Phco8g02069 1065 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Phco8g02069 1065 MobiDBLite consensus disorder prediction 379 421 - -
Phco8g02069 1065 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 946 IPR044817 GO:0003677
Phco8g02069 1065 Pfam SBP domain 184 257 IPR004333 GO:0003677
Phco8g02069 1065 SMART ANK_2a 887 917 IPR002110 GO:0005515
Phco8g02069 1065 SMART ANK_2a 831 860 IPR002110 GO:0005515
Phco8g02069 1065 SMART ANK_2a 927 956 IPR002110 GO:0005515
Phco8g02069 1065 FunFam Squamosa promoter-binding-like protein 14 175 245 - -
Phco8g02069 1065 SUPERFAMILY SBT domain 182 263 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02069 Phco-Chr8 22023135 22029939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco8g02069 SBP 1.3e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02069 8 22023135 22029939 Phco8g02069 8 22023135 22029939 ECH
Phco8g02069 8 22023135 22029939 Phco7g02596 7 44834145 44844037 PCT