LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g02068	ATGTTCATAAGATGTCTCTCGGTGAAGTCAAGGTTGCTCTTTCACGCACAAGCACAAACAGAACATAGCTTAACAAAACATTTCTTTCTTCTTCTTCTTATTCTTCTTGGTCTTCAAACCTCTCCTTCTTCATCCATTTTCTGCTCCAAACAATACAAAAGCTGTAACCACACACACCGTCTTCGCTTTGAATTCCGAAAGCACCGTGTTGAATTGAGGATCATGGGTTGCTTTGGCTTCTGCAAAGGAGATGACAGTGTTGCAATTGCTGACAGAGGACCTTTCATGCAAAACACTCCCACTGGGAACGCCAGTTATCATGGCAGACATAATGCAGTGACTGCTCCTCGGCCAATAAATTTTCAACCTATTGCTGTCCCTTCTATTACAGTAGACGAATTGAAGTCTTTAACAGATAATTTTGGCTCAAAGTCTTTCATTGGTGAGGGTGCATACGGGAAAGTATATCAAGCTACATTGAAAACTGGGCGTGCAGTGGTAATCAAAAAGCTAGATTCCAGTAATCAGCCAGAGCAAGAATTTCTTTCTCAGGTCTCCCTCGTATCAAGGCTAAGGCATGAAAATGTTATTGAGCTTGTTAACTATTCTGTTGATGGTTCTTTTCGTGCCCTTTCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACACGGACGAAAAGGTGTCAAGGGCGCACAACCTGGTGCATTACTGTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTCATGAAAAGGCAGAGATTCATATAATCCATCGTTATATTAAGTCTAGTAACATACTTCTTTTTGACGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTTGGGACCTTTGGTTATCATGCTCCTGAATATGCAATGACGGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTGCTGGAACTCTTGACTGGGCGCAAACCGGTTGATCATACACTACCCCGAGGACAGCAAAGCCTTGTCACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGCGTTGATGTTAGACTAAAGGGAGAGTACCCTTCAAAGTCCGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGAGTTTCGGCCAAACATGAGCATTATAGTGAAAGCTTTAAAGCCTCTACTGAATACTCGTTCTACTCCCTCAAAGGAATCACCAAACATGTAA	1305	0.4253	MFIRCLSVKSRLLFHAQAQTEHSLTKHFFLLLLILLGLQTSPSSSIFCSKQYKSCNHTHRLRFEFRKHRVELRIMGCFGFCKGDDSVAIADRGPFMQNTPTGNASYHGRHNAVTAPRPINFQPIAVPSITVDELKSLTDNFGSKSFIGEGAYGKVYQATLKTGRAVVIKKLDSSNQPEQEFLSQVSLVSRLRHENVIELVNYSVDGSFRALSYEYAPKGSLHDILHGRKGVKGAQPGALLSWAQRVKIAVGAARGLEYLHEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALKPLLNTRSTPSKESPNM	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g02068	434	ProSitePatterns	Protein kinases ATP-binding region signature.	147	170	IPR017441	GO:0005524
	Phco8g02068	434	Gene3D	Phosphorylase Kinase; domain 1	106	215	-	-
	Phco8g02068	434	SUPERFAMILY	Protein kinase-like (PK-like)	119	417	IPR011009	-
	Phco8g02068	434	FunFam	pto-interacting protein 1	217	428	-	-
	Phco8g02068	434	CDD	STKc_IRAK	147	420	-	-
	Phco8g02068	434	Pfam	Protein tyrosine and serine/threonine kinase	146	417	IPR001245	GO:0004672\|GO:0006468
	Phco8g02068	434	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	104	425	-	-
	Phco8g02068	434	Gene3D	Transferase(Phosphotransferase) domain 1	217	432	-	-
	Phco8g02068	434	ProSiteProfiles	Protein kinase domain profile.	141	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g02068	Phco-Chr8	22006864	22011035	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Phco8g02068		PK_Tyr_Ser-Thr	1.4e-44	CL0016