Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01972 ATGAAGGCTCCATCCAATGGTTTCTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAAGAGACTGACTTCATTCCTAGTTACCCTAACCTTCCCTCTAAGTTGATTTGTATGCTCCACAATGTTGCCTTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAATGCCGTCAACCTACTGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCAACCTTGGATTACTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCTAAGGATTTGCACGATAATACATGGCCATTCAGACATATTTATCGAGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAATGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAATCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCATTTACTATATTTTACAATCCAAGGGCTAGCCCCTCCGAATTTGTTGTTCCACTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTACGCAGATATATGGGAACAATCACTGGGATCAGTGAGTTGGATCCTGCCCGATGGAAAAACTCACAATGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCCAGTAGAGTTTCAATTTGGGAAGTTGAACCTGTAGTTACTCCTTTTTATATTTGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGACGAATCAGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTGCAGTGGATGAACATGCAACCGAATAATCATCTCTCAGCGGCTCAATCAGGATGTTTCCCACCCATGCTTCCATCTAATACCCTTCAGGGTAACCTTGCCACCGAAGATCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTTCTCTCTTCCCCAAGTCTTCAATTAAACAAACCCAATCTACCAAATCAAATCAATCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAACAACAGCAGCAACAGTTGCAGCAACAACAGCATCAACAGTTGCAGCAACAACAGCTGCAGCAGCAGCAGCAGCAACAACAACAGCAGCTTCAGCAACAACAGCAGCAGCAATTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAACAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGTCATTGCTGCAGCAACTGCCTCAACAGCTAGGACAGCAGCCCCAGAAACAGCAACAGCCAAGTCAACATGCTACACTTGTGCATAATGGGGTAGTTGCTTCTAACCAGATTACAAGTCAGTTTGTACAACCACCGATGGCATATGGTCAGCTTCAGCAACAACAATTACTCTCAGGAGGAATCCAACCCCAGCAAGGTATCCAGTCAGCTAGTAAGAATACATTTCCATTGACATCCTTATCACATGACTCACAATTTCAGCAACAGATAGATCAGCAAGCTAACCTCTTACTAAGGCAACAGCAACAACAACAACAGACACAATTGCAACAATCTCCACTCCAGTTGTTGCAACATAACCTGCCACAGATAGCATCACAACAACAACCGCCTGCCACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAACAGCAACTTCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTTCTACCACAACAAAATACTCACCAACAAAACCAGCAATTACCACAGGCCCCACCACCTATATCACATCATCAGCCTCAACAGGTTGCCAATAATGCATTGTCAACAGAGAAGCTTCTTAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGATTCCTATGAACCAATCCCAGAATACACAGAAATCACTTACCATCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACCAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCTACATTAGGAGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACATGCAGAACAAACATGACTTGCTCAATCTAAAAGGACTTGACCAGTTGAAGTATAAAGGGACAATCACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTATCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACTATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGAGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCCTTTGGAGTGCCAAACATGCCTTTCAAGCCTGGTTGCTCAAGTGACGTTGTCATCAATGAAACTGGTGTTCTGAATAATAATGGCTTGCGGGCCAACCAACCTCCACCTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCACATTCAGAAGTGCAACAAATGAGCTTGGATGGGGATTTGGGTGGTACTGTTCCAATCCCTAATCAAGCTTGCAGTGGTACAGACAGTGGCAATGCATGGAGAGGACAATACGAAGATAACTCAGCTGCCTCTTTTAATAGGTAA 3456 0.443 MKAPSNGFLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQCRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEMKHLLLGIRRANRQQSALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDPARWKNSQWRNIQVGWDESTAGERPSRVSIWEVEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRGMPWLGDDFGMKDASSSIFPGFSLVQWMNMQPNNHLSAAQSGCFPPMLPSNTLQGNLATEDPSKLLSFQAPVLSSPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQQLQQQQHQQLQQQQLQQQQQQQQQQLQQQQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLSLLQQLPQQLGQQPQKQQQPSQHATLVHNGVVASNQITSQFVQPPMAYGQLQQQQLLSGGIQPQQGIQSASKNTFPLTSLSHDSQFQQQIDQQANLLLRQQQQQQQTQLQQSPLQLLQHNLPQIASQQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQQLLSTSTPLLQSQLLPQQNTHQQNQQLPQAPPPISHHQPQQVANNALSTEKLLNSNNFSSSSLMQSQQIPMNQSQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPATLGGSLIVEPTSNLIQELHSKPDMQNKHDLLNLKGLDQLKYKGTITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVVINETGVLNNNGLRANQPPPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGTVPIPNQACSGTDSGNAWRGQYEDNSAASFNR 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01972 1151 Gene3D - 124 227 IPR015300 -
Phco8g01972 1151 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Phco8g01972 1151 CDD B3_DNA 125 226 IPR003340 GO:0003677
Phco8g01972 1151 MobiDBLite consensus disorder prediction 781 800 - -
Phco8g01972 1151 FunFam Auxin response factor 1020 1112 - -
Phco8g01972 1151 FunFam Auxin response factor 124 228 - -
Phco8g01972 1151 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco8g01972 1151 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 575 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco8g01972 1151 Coils Coil 515 538 - -
Phco8g01972 1151 SMART B3_2 126 228 IPR003340 GO:0003677
Phco8g01972 1151 MobiDBLite consensus disorder prediction 1128 1151 - -
Phco8g01972 1151 MobiDBLite consensus disorder prediction 808 832 - -
Phco8g01972 1151 ProSiteProfiles PB1 domain profile. 1024 1107 IPR000270 GO:0005515
Phco8g01972 1151 FunFam Auxin response factor 289 361 - -
Phco8g01972 1151 SUPERFAMILY CAD & PB1 domains 1037 1102 - -
Phco8g01972 1151 MobiDBLite consensus disorder prediction 738 763 - -
Phco8g01972 1151 Pfam AUX/IAA family 1023 1110 IPR033389 -
Phco8g01972 1151 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Phco8g01972 1151 Gene3D - 1021 1112 - -
Phco8g01972 1151 Gene3D - 289 360 - -
Phco8g01972 1151 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01972 Phco-Chr8 20948389 20954873 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco8g01972 AUX_IAA 5.1e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01972 8 20948389 20954873 Phco8g01972 8 20948389 20954873 ECH
Phco8g01972 8 20948389 20954873 Phco7g02658 7 45527987 45534641 PCT