Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01961 ATGGCCGCTGTTCACCTCTTCTTCTTCCTCCTCCTCCTCTCCCTCCTCCCTTTCTCCCTCCCCCTCACTGATAACCAAGCTCTCCTCGCCCTCAAAAAATCCTTCTCCAACCCCCAAACCCTCTCCTCCTGGATCCCCGACCAGAACCCTTGCTCCGCCCGCTGGGTCGGCGTCATCTGCCTCAATAACGGCATCAGCAGCATCCATCTCACCGACCTCTCACTCTCCGGCTCCATCGACATCGAAGCCCTCTCCCAGATCCCCTCTCTCCGCTCCATCAGCTTCGTCAACAACTCCTTCTCCGGTCCCATCCCTCCCTTCAACAAACTCGGAGTCCTCAAGGCCCTCTACTTGACCAACAACCAGTTCTCTGGCCCCATCCCCTCCGACTTCTTCTCCCAGTTAGCCTCCTTGAAGAAAATATGGCTCTCCTACAACCAATTCACCGGCCCCATCCCCGAATCCTTAACCAACCTCCGTTTCTTATCCGAGCTCCATCTCGAAAACAACCAGTTCTCCGGCCCCGTCCCCGAACTCAAACAGGACATCAAATCCCTCGACATGTCCCGCAACAACCTCCAAGGCCAAATCCCCTCCTCCATGTCGCGCTTCGACCCCAAATCCTTCTCCGACAACAAAGAACTCTGCGGGAAGCCACTGGCTAAAGAGTGCGAGTCCGAGCCCGCGCCCAGTGATAGCGTTGGTTGGGGGTTGAAGGTCGTTATTCTCATCTTCATTGCCGCTGTTCTCGCAGGGGCTTTTGTCATTATGCGATCCAAGCGTCAACGCGACGACGACTTCAGCGTGATGAGCAGGGATAATGCGGAGGAGGTGGTGCAGGTGCACGTGCCAAGCACCAACCACAGCAGGGGAACCTCCGAGGGAAGCAAGAAGGAGTCGACGACGGCATCGAAGAAAGGGACGTCGCGGAGTATTGGCGACCTCGTGATGGTTAACGATGAGAGGGGCACATTTGGCTTGCCCGATTTGATGAAGGCTGCGGCGGAGGTTCTCGGAAACGGTGGGCTGGGTTCGGCGTACAAAGCCGCCATGGCTAGTGGGTTGTCTGTGGTGGTAAAGCGGATGCGAGAGATGAATAAAGTGAGCAGAGACATCTTCGACGCCGAGATGAGACGCTTTGGGAGACTCAGAAACCCTAACATCTTGACCCCTCTCGCTTACCATTACCGCAAGGAGGAAAAGCTGTTCGTCACAGAATACATGCCCAAAGGAAGCTTGCTATATGTCTTGCACGGTGACAGAGGATCGAATCATTCGGACCTGAACTGGCCAATCCGTTTGAAAATTGTGAAGGGAATAGCACGAGGGTTAGGGTTTCTATATAAAGAATTTCCTAACGAAGACCTGCCACATGGAAACCTGAAATCCAGCAATGTTCTGCTAGCTGAAAATTACGAGCCTCTCCTGGGCGATTTCGCCTTTCATCCACTCATCAACCACAACTACGCCGTACAGACAATGTTTGCCTACAAAACTCCGGATTACGTATCATACCAGCGTGTTACACAGAAAACCGACGTTTATTGCCTCGGAATCATCGTTCTTGAGATCATCACCGGGAAATTCCCTTCTCAGTATCACAGTAATGGGAAGGGTGGCACTGACGTAGTGCAGTGGGTGTTCACTGCGATCTCTGACAGAAGAGAGGCCGAGTTGATTGATCCAGAGTTGAAGAGCAGTCACTCTAACTCCCTCAATCAAATGCTGCAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 1827 0.5309 MAAVHLFFFLLLLSLLPFSLPLTDNQALLALKKSFSNPQTLSSWIPDQNPCSARWVGVICLNNGISSIHLTDLSLSGSIDIEALSQIPSLRSISFVNNSFSGPIPPFNKLGVLKALYLTNNQFSGPIPSDFFSQLASLKKIWLSYNQFTGPIPESLTNLRFLSELHLENNQFSGPVPELKQDIKSLDMSRNNLQGQIPSSMSRFDPKSFSDNKELCGKPLAKECESEPAPSDSVGWGLKVVILIFIAAVLAGAFVIMRSKRQRDDDFSVMSRDNAEEVVQVHVPSTNHSRGTSEGSKKESTTASKKGTSRSIGDLVMVNDERGTFGLPDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNPNILTPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGSNHSDLNWPIRLKIVKGIARGLGFLYKEFPNEDLPHGNLKSSNVLLAENYEPLLGDFAFHPLINHNYAVQTMFAYKTPDYVSYQRVTQKTDVYCLGIIVLEIITGKFPSQYHSNGKGGTDVVQWVFTAISDRREAELIDPELKSSHSNSLNQMLQLLQIGAACTESNPDQRLNMKEAIRRIEEVQV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01961 608 MobiDBLite consensus disorder prediction 279 313 - -
Phco8g01961 608 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Phco8g01961 608 SUPERFAMILY L domain-like 23 204 - -
Phco8g01961 608 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Phco8g01961 608 Gene3D Transferase(Phosphotransferase) domain 1 408 608 - -
Phco8g01961 608 ProSiteProfiles Protein kinase domain profile. 332 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01961 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 607 IPR046959 -
Phco8g01961 608 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01961 608 Gene3D Ribonuclease Inhibitor 23 131 IPR032675 -
Phco8g01961 608 Gene3D Ribonuclease Inhibitor 132 182 IPR032675 -
Phco8g01961 608 SUPERFAMILY Protein kinase-like (PK-like) 336 603 IPR011009 -
Phco8g01961 608 Gene3D Phosphorylase Kinase; domain 1 297 407 - -
Phco8g01961 608 FunFam Nuclear pore complex protein NUP107 22 178 - -
Phco8g01961 608 Gene3D Ribonuclease Inhibitor 183 226 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01961 Phco-Chr8 20827569 20829602 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco8g01961 Pkinase 1.3e-26 CL0016