Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01938 ATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTGCCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGGTTGGGGAGGAAGATAGACCCTGAGCCAGGGAGATGTAGGAGAACAGATGGGAAGAAATGGAGATGCTCAAAGGAGGCATATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGTAACAACAATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCCCCAACCACTCATTCTCTCTCCGTGTCCTCTCATGACACTTACCATCACCACAACCCTCAACATTCCTCCCACTCCTTCCTCTATCATCACCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCGTGGCAACTCACACCACTGACCATAAGCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCACAGCAAGATCAGGGTTGCTACATATCAGGAGCTGGCAGTGATATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGACGAATGGCCCCCCAAGAGCAGAGGGTCATGGCTAGATTTGGATGACAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACTTCTTCTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGAAGGTTGA 1122 0.4759 MNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTVTTITDASTPTILSITKNSPALSPTTHSLSVSSHDTYHHHNPQHSSHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGAGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQREG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01938 373 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco8g01938 373 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco8g01938 373 PANTHER GROWTH-REGULATING FACTOR 5 8 361 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco8g01938 373 MobiDBLite consensus disorder prediction 142 180 - -
Phco8g01938 373 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco8g01938 373 MobiDBLite consensus disorder prediction 142 159 - -
Phco8g01938 373 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Phco8g01938 373 Pfam WRC 77 119 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01938 Phco-Chr8 20530255 20532172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco8g01938 WRC 7.8e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01938 8 20530255 20532172 Phco8g01938 8 20530255 20532172 ECH
Phco8g01938 8 20530255 20532172 Phco7g02690 7 45880009 45882355 PCT