Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01933 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAATACATTAGGGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGAGAGGCAATATAACCTCAGATGAAGAAGAGCTCATTATCAGACTCCACAAACTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGATGGTCACAAAACCTCAACCACTTGTCGTAGACCAAGCAATGAAAACAGCACACAGAATCCAATGTCTCTTCCTAAAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTGCCCAACAAGTCTGAGGAAGAAGCAGAAGAAGATGAAGAAGAAAGGGTTGTGGATGCTGTAATAAGTGACCAAATGGAACTCACTACGAACAACAATGGGTTCCTGTCGTTTCCCAATGAAGAAAAAGAGCTCTCAACAGATATGCTCACAGATTTCAACGTGGGGGATATCAGCTTGTCTGATCTTCTCGACTCCGATTTCTCCAATATCTACAACTTTACCTGCACTACCAACGCTGTTCACAACAACAGCAACAACGAGCAGTTATTCTCTCCTTGTTCCGACCAACCTTATCCCGTGTGCTCAGATGAACTTCTCAAGAACTGGAAGCAAACCAATTTTGCAGACGAAACCAATGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGAGACCAGCGAGGAAAGAGTAGGACAATCATAA 930 0.4323 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSTTCRRPSNENSTQNPMSLPKDSHLVRTKATKCTKVFFPHPSMLQLPNKSEEEAEEDEEERVVDAVISDQMELTTNNNGFLSFPNEEKELSTDMLTDFNVGDISLSDLLDSDFSNIYNFTCTTNAVHNNSNNEQLFSPCSDQPYPVCSDELLKNWKQTNFADETNASNNLHSFISFLETSEERVGQS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01933 309 CDD SANT 16 61 IPR001005 -
Phco8g01933 309 FunFam MYB-related transcription factor 13 66 - -
Phco8g01933 309 MobiDBLite consensus disorder prediction 126 143 - -
Phco8g01933 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco8g01933 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco8g01933 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco8g01933 309 Gene3D - 70 141 - -
Phco8g01933 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco8g01933 309 FunFam Transcription factor TT2 70 140 - -
Phco8g01933 309 MobiDBLite consensus disorder prediction 118 143 - -
Phco8g01933 309 Gene3D - 14 66 - -
Phco8g01933 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco8g01933 309 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Phco8g01933 309 CDD SANT 71 112 IPR001005 -
Phco8g01933 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco8g01933 309 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Phco8g01933 309 SMART sant 66 114 IPR001005 -
Phco8g01933 309 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01933 Phco-Chr8 20454452 20456049 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g01933 Myb_DNA-binding 1.6e-13 CL0123