Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01921 ATGAAGCCATTCTTGTCAAATCGTCCTCTTGATACCATGTACAATTGTTCACAAGTTGATTTCAGTCATTCGATGGCCCATACTCCTTATCCTTGTGGTGATCCTTATTTTGCCAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATGATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGCCCCATTTATGTCAATGCTAAACAATATCATGGTATACTGAGAAGGAGACAGTCTCGAGCAAAGCTTGAGGCTCAAAACAAACTTATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGGTTTCTCAGCGCCAAACAGTTGCAAGAATCTAACTCTGTACATGTTGATAATACCCATTCAGGCCCGGGCCCTGTCAAGGTTTATCAAAAGAAAGAAGCATCAGAGGTGGAAAGTCATCCCTCAAGGACAGCAGAAAATGCATGTATCACATTTACAGCCATCTCGGGCTTGACAAGCATGTCCAGTAACAGTCTCAATTTCAGGCAGCCCGAACACAACTTCTTGGGGAACTCCTCTAACATGGGTGGATCATCACAATGCAGTGGGGGACTCACTTTTGGTGGTGGAACTCGGCAATGTGCTTCTGTTGGCCGGTGA 708 0.4576 MKPFLSNRPLDTMYNCSQVDFSHSMAHTPYPCGDPYFASSLVAYGPQAINQPQMIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQESNSVHVDNTHSGPGPVKVYQKKEASEVESHPSRTAENACITFTAISGLTSMSSNSLNFRQPEHNFLGNSSNMGGSSQCSGGLTFGGGTRQCASVGR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01921 235 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Phco8g01921 235 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Phco8g01921 235 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Phco8g01921 235 Gene3D - 74 136 - -
Phco8g01921 235 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Phco8g01921 235 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Phco8g01921 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Phco8g01921 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 176 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01921 Phco-Chr8 20300425 20302117 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco8g01921 CBFB_NFYA 4.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01921 8 20300425 20302117 Phco8g01921 8 20300425 20302117 ECH