Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01901 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTGCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGGGATTACAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTTTCACTAAAGACAGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCGTTTCTGCATCGAGATATCAAACCTGATAATTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGCTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCGAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAGAAAATTAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGATCATTGAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGAATATTCCGGGACCTTTTTATACGAGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACTATTTTGAAGTATCAACAATCACAGTTAGCCACTCCTTCAACACGGGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTCCTTTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCTGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCAAGGCGGGTTGCTGTTTCCAGTAGCCGTGATGCCTTTGTTGGTACCGAATCCGAAATTCGTACTCGCACTGCTGAAGCTAGCCCTGGAGTAGCACACAGAGGTTTGAGTGCGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTATCATCCGGAAGAAATGCTTCTCACGTGAAAAATTATGACTCTGTACTCAGGGGCATGGAAGGTTTGCAATTAGAGAATGACGAGAGGACCCATTATTAA 1365 0.4278 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPSTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPPLVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSSSRDAFVGTESEIRTRTAEASPGVAHRGLSAQRSSPIGSSDPKRVVSSGRNASHVKNYDSVLRGMEGLQLENDERTHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01901 454 FunFam Putative Casein kinase I 1 85 - -
Phco8g01901 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Phco8g01901 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Phco8g01901 454 MobiDBLite consensus disorder prediction 362 384 - -
Phco8g01901 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01901 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Phco8g01901 454 MobiDBLite consensus disorder prediction 304 345 - -
Phco8g01901 454 MobiDBLite consensus disorder prediction 304 322 - -
Phco8g01901 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Phco8g01901 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01901 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01901 454 FunFam Casein kinase I isoform delta-like 1 308 - -
Phco8g01901 454 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Phco8g01901 454 MobiDBLite consensus disorder prediction 408 429 - -
Phco8g01901 454 MobiDBLite consensus disorder prediction 362 429 - -
Phco8g01901 454 PANTHER CASEIN KINASE-RELATED 9 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01901 Phco-Chr8 20086791 20091922 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Phco8g01901 Pkinase 9.9e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01901 8 20086791 20091922 Phco8g01901 8 20086791 20091922 ECH
Phco8g01901 8 20086791 20091922 Phco7g02721 7 46183882 46191355 PCT