Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01898 ATGGGAGAAGAAGTCGCAAGAGTCAAAACAGAGATGTTCGACGACAGCGAAAGCGATCGACACGACGACGTTTTCAGCGAGAGCAAGGCCTCCGGAGTCACGGAAGAGCCAACGACGGTCCACGTCAAAGAAGAGGTGGATGACGGCTCCGTTAACGGTTTCATGGATAAGATGCCGAAGCCGATGGAAGGGCTGCACGAGATGGGTCCCCCACCGTTCCTCAAGAAGACCTTCGAAATGGTGGAGGACTCTCACACTGACTCCGTTGTGTCATGGAGTCAAACTCGCGATAGTTTCGTCGTTTGGGACTCCCACGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTAAAGAACATAAGGAGGAGGAGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGGTGAAGCCGGGCGTGGAGGCTGAAATGGAGAAACTGAAGAAAGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTGCAGCTCACAAATGTTCAGGAGAGAGTTCGGTGTGCTGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGACCCGCGTTTGTTGAACAGTTAATCCAAAAGATTAGGAGGAAAAGAGAGGTTGATGGTAACGACATGGTTAAGAGACCTAGATTGATGGGAAACCCCTGCTGTGTACCCTTCCCCAAGACCATGGGTACAACCCCTAATGTTGATTATAGACACCAAAGTCATAAGCAATTCCCCTCAATGCAATCCGAGCTTGATGGATTTCTGTCTGAAACTGTGAACATCAGCAAGTTGGAGCACCCAACTCCCTCTCCTTTGGAAGATGAATTATGTAACTCTGTGCAAGGGTTAAGGGCCCATGGTTGTTCTAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGATGAAGAACTAGATGTGAATGACTCGAATATCTATCTTGAATTAGAGGATTTGATCACTAAGCCAACGGATTGGTCTCTTGGATCTGCATTTGGATTGGTGGAGCAAACTAGTTGA 1215 0.4683 MGEEVARVKTEMFDDSESDRHDDVFSESKASGVTEEPTTVHVKEEVDDGSVNGFMDKMPKPMEGLHEMGPPPFLKKTFEMVEDSHTDSVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHNNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNRLHQGAFNMVKPGVEAEMEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKREVDGNDMVKRPRLMGNPCCVPFPKTMGTTPNVDYRHQSHKQFPSMQSELDGFLSETVNISKLEHPTPSPLEDELCNSVQGLRAHGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPTDWSLGSAFGLVEQTS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01898 404 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 Gene3D - 66 163 IPR036388 -
Phco8g01898 404 Coils Coil 184 204 - -
Phco8g01898 404 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco8g01898 404 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g01898 404 FunFam Heat shock transcription factor 1 66 163 - -
Phco8g01898 404 MobiDBLite consensus disorder prediction 1 39 - -
Phco8g01898 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 289 IPR027725 -
Phco8g01898 404 SUPERFAMILY "Winged helix" DNA-binding domain 69 162 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01898 Phco-Chr8 20051609 20053187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco8g01898 HSF_DNA-bind 1.8e-32 CL0123