Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01895 ATGGATGGTGTGTATGCCCTCCCTGAAGCCCCCAGAACTGATTTTCTCCGCAGTCTGCTGCAATCTTTTGGCTGCACATATGTTTCTATGTGGCAATATCACTCCAATTCATTCAATCGTTTGTTCTTCTTTGATGGTTTATACAATCTACCAAACAACCAACCAAGCTCTTCTTTAGGAACTGAAGCTGAAAGGCTTTTTCGCCAGTATCGGGCTTTAACGTTTGATGTCTCTCATGAATGTGTTCCTGGAGTTGCTTTCAGGAAGCAACTTCCCTACATACAGCTCAAACTGTTGGATCTCCTACCACTTGCATCCACCCAAATACAAAAACAATTCTTTCTGATGGCTGTTTTCATGGGGTGCAAAATGGGAGAAATTGAGTTGGGGTTCTCCAACATTTCTCAAGCTGACATTGAGACATCACTTAAGAATTTATTCCCAGAAGATTTCTATTTACGTTCCCAATCAATTCATCAGAATCCACATTCATCATCATCATCATCTTCTTTCATATCAATTTCTACAGATACCTCTAATCAACATTCATCCCTATCACTCAATATTCCGGGAACTTCCCACTGCAACTTTCCTGAAGCCCTTGGTGTGGCTCCCACACAACCTACTCCTCACCAACAAACTATCCCACCATTATCTCAACTCATTCCATTTCCAAGCTATTTACCCACACCAGAGGCTGAACACGAACAAATAGTAAGAACATTAATCCAAGTCATGTCTTCAACTTCCCAGCCCCATCAAACCCAACCAATTTTGCCTCATAATTCTGCAATACACCCTGCAGCTGCCGATTTCACGAGACATAGACCAGATATCATAAACCCAAATATAAAACCCCATATGGAGTCCAATTCTAGCAGGCAAAACCTGCATAATACATCATTTCCATTGTTTAAAAACTTCAATTCAATGACAATGAGAGAATGCAATCCTATTGAAGCAACCCATCCCACTAGTTCCCAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGTGCACTTCTTTATCCGGAAACTAAGAAAAGTAAAGCGACGATCCTTAAAGCAGCAAAGGAGACAATAATATCTTTGATGGCTGATATTGAAAAGCTTAATAACATGAGAAAACAGCAGCTGATAACAAATCTGTCAAGCGAAGGTAGCAGTAGTAGGGATGAAAACAAAGGTAGGTTCTCTGATGAAAGATTGAATGTTCGGGTTTGGCATGTATCAGAATCAAGTTCACCAGACGAGCAAATGGTGGAGTTGCAAGTGACTGTGAGAGAACAAAGCTATCACGTTGATGTATTGATTACCATAATGGAGTTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGCGACAACCATTCACGAATTAACCTTCAGGCTGAGGATTATTGAGGGCAATGAATGGGACGAACGTGCTTTCGAGGAAGCAATCAGAAGATTGGTATCTGACCTAATACAATGCCAAGTCCACCAAAATAAATCCACATAA 1569 0.4073 MDGVYALPEAPRTDFLRSLLQSFGCTYVSMWQYHSNSFNRLFFFDGLYNLPNNQPSSSLGTEAERLFRQYRALTFDVSHECVPGVAFRKQLPYIQLKLLDLLPLASTQIQKQFFLMAVFMGCKMGEIELGFSNISQADIETSLKNLFPEDFYLRSQSIHQNPHSSSSSSSFISISTDTSNQHSSLSLNIPGTSHCNFPEALGVAPTQPTPHQQTIPPLSQLIPFPSYLPTPEAEHEQIVRTLIQVMSSTSQPHQTQPILPHNSAIHPAAADFTRHRPDIINPNIKPHMESNSSRQNLHNTSFPLFKNFNSMTMRECNPIEATHPTSSQKYYHTISERKRREKLSECFQELSALLYPETKKSKATILKAAKETIISLMADIEKLNNMRKQQLITNLSSEGSSSRDENKGRFSDERLNVRVWHVSESSSPDEQMVELQVTVREQSYHVDVLITIMEFLERVQNVTLISTNTNLHITEGATTIHELTFRLRIIEGNEWDERAFEEAIRRLVSDLIQCQVHQNKST 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01895 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 390 IPR036638 GO:0046983
Phco8g01895 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Phco8g01895 522 Pfam Helix-loop-helix DNA-binding domain 331 376 IPR011598 GO:0046983
Phco8g01895 522 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 105 510 IPR044658 -
Phco8g01895 522 Gene3D - 325 398 IPR036638 GO:0046983
Phco8g01895 522 Coils Coil 366 386 - -
Phco8g01895 522 SMART finulus 333 382 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01895 Phco-Chr8 20017477 20022184 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01895 HLH 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01895 8 20017477 20022184 Phco8g01895 8 20017477 20022184 ECH
Phco8g01895 8 20017477 20022184 Phco7g02729 7 46247427 46251880 PCT