Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01886 ATGGCTCCTAGAATCCTTCTATGCGGCGACGTTTTAGGTCGCCTCAACCAACTCTTTAAGCGCGTCTCTTCGGTGACCAAATCTGCAGGTCCATTCGACGCGCTCTTATGCGTAGGCCAGTTCTTCCCGGACTCACCGGACCAATTGGAAGAGTTCACGGCGTACATCGAAGGTGGATCACAGATTCCGCTTCCAACTTACTTCGTCGGCGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGTTTCATGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGTTGAAAGGCGGTGGCAAATTCCCCCTCTTCGGGTTATCGGTGGCCTATTTATCTGGTAGGAAGTCATCCAGTGTTCAACAGTTTGGAACTTACACCGAAGATGATGTTGATGCTTTGCGAGCTATTGCGGAGGAACCTGAAATAATTGATCTGTTCTTGACATATCCTTCAATTGGTGTGCATTATCTCATTTTGAGACATAGTTATGGCGTCACCAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGTGTCTGATGCTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAGGAGATCAAACCACGTTATCACATTGCAGGCACAAAAGGTATATACTATGCCCGTGAACCATATACCAATGTTGATGCTGTACATATCACCCGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAACAGAAATTTATTCATGCAATCTCCCCAACACCTGCTTCCACCATGTCTTCAACTGAGATTGCTGTGAAAACCACAACTACCACCTTATCACCGTACACATTTGTGGAGAAAAGAACTGCTCCAATGGATTCCACAAAGAGATCCAATGATTCTATCTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAACTGGACAAACTGATAAGATGTGTTTCAAATTTGTTTCGTCTGGATCTTGTCCACATGGAGAGAAGTGCCATTTTCGACATGATATAGATGCAAGGGAGCAGTGTAGGAGAGGTGTTTGCTTTGATTTTTTGAACAAGGGAAAATGCGAAAGGGGCCCAGATTGCAATTTTAAGCACAACTTGCAGGATGAAGGTGACAGACATCCTTCAAGGAGGCCTGGATCTGGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGACACATTTAATAGTAAGCATTGGGGAAAATTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCACGCATTGATACTACCAGTTGAGCATATGCCTAGTACCTTATCTATGTCTTCTGAATCTGAAATTGAGCTCTCTAGGTTTCAGAGCAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTGATATTTTTTGAGTGGGCCTCCATCCGTGGAACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTACCAAAGCAGTTATGGTTGAAAATGTTTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACGCAAATTCATGGGGGTTCAAGCTTGTTCTATGCTCAAGTCCCACGAGGCACAATTCTGCTGCATCATGTTGAAGAGAACGAGAAATTTCCTGCCCAATTTGGCCGTGAGGTTATGGCTGGGTTGCTCAATATGGCAGATAATGCAGATTGGAGGAATCACAAACATAGCAAAGATGAGGAAATGAAAATTGTTGAAAATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAA 1836 0.4379 MAPRILLCGDVLGRLNQLFKRVSSVTKSAGPFDALLCVGQFFPDSPDQLEEFTAYIEGGSQIPLPTYFVGDYGVAAPKFLLQASKDSANRGFMMDGFKVCHNLYWLKGGGKFPLFGLSVAYLSGRKSSSVQQFGTYTEDDVDALRAIAEEPEIIDLFLTYPSIGVHYLILRHSYGVTNGAAASDIPAGVSDAVGSDSTISELVQEIKPRYHIAGTKGIYYAREPYTNVDAVHITRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAVKTTTTTLSPYTFVEKRTAPMDSTKRSNDSISDSQYWRYDVSQKRQKHETGQTDKMCFKFVSSGSCPHGEKCHFRHDIDAREQCRRGVCFDFLNKGKCERGPDCNFKHNLQDEGDRHPSRRPGSGRSKECWFCLSSPNVETHLIVSIGENYYLALAKGPLVEDHALILPVEHMPSTLSMSSESEIELSRFQSSLKSYCKSQEKEVIFFEWASIRGTHANLQAIPIPSTKAVMVENVFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIHGGSSLFYAQVPRGTILLHHVEENEKFPAQFGREVMAGLLNMADNADWRNHKHSKDEEMKIVENFKSRFQEYDPNC 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01886 611 SMART c3hfinal6 321 346 IPR000571 GO:0046872
Phco8g01886 611 SMART c3hfinal6 353 378 IPR000571 GO:0046872
Phco8g01886 611 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
Phco8g01886 611 SUPERFAMILY HIT-like 396 466 IPR036265 -
Phco8g01886 611 Gene3D - 308 379 - -
Phco8g01886 611 CDD MPP_CWF19_N 6 242 - -
Phco8g01886 611 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 610 IPR040194 -
Phco8g01886 611 SUPERFAMILY CCCH zinc finger 322 346 IPR036855 GO:0046872
Phco8g01886 611 Pfam Protein similar to CwfJ C-terminus 1 394 505 IPR006768 -
Phco8g01886 611 Pfam Protein similar to CwfJ C-terminus 2 530 608 IPR006767 -
Phco8g01886 611 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Phco8g01886 611 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g01886 CwfJ_C_1 3.9e-36 CL0265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01886 8 19884982 19888842 Phco8g01886 8 19884982 19888842 ECH