Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01882 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTGATTCCTCTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTCACCATGCTTACCCTTCTTTTTCTTCTCTATCTTCATCATATCCACTTCTCTTCAACCCTCCAGAACAAGAAGCTAGATCACACTACTGGGAACCAACAAAGCACTTACCAGCTCATGAGCAGGCTGAGAAGATTAACCCTAACACGGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCTCAAGTTGGCAGTTTGGAAGAATAAAGAGAGGAGTGAAGATCATGAGCCAGCTGCTGAGGATGGTTCGGTGAACTTGATGCCTTCAAAGATGAGAATGATGCGGAAGATGATGGTGCCGGATCAAACTGGTGCATATATAGAAGACAACACTATGCACAAGTTTGAAGATCAGAAGCAACCATTGTCACCTCTTGGAACTGATAACAGCAGCAGCAGCAACAACTATTCAAACCACAGTAATAATACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAAACTCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAAAGGAAGGCGAGACGAGCCATGGCAGCTGCGGCATCGGGAAATGGAACAGTAATTTTGGAAACTCAGAAACCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAACTCAGGGTGCACCCCAGATGAAAAAGAAGCGCAAGCATGGGGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTCTTCCCTCAGGACGAAAAAGAGGCTGCAATCCTTCTCATGGCTTTATCATATGGCCTTGTTCATGGATGA 930 0.457 MIPAYRHSVSSVIPLDLNEDQNHELFTPTHHAYPSFSSLSSSYPLLFNPPEQEARSHYWEPTKHLPAHEQAEKINPNTGSWDHSVAESELKLAVWKNKERSEDHEPAAEDGSVNLMPSKMRMMRKMMVPDQTGAYIEDNTMHKFEDQKQPLSPLGTDNSSSSNNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVILETQKPVKGNKLQKKEKKTRTQGAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01882 309 FunFam GATA transcription factor 21 170 258 - -
Phco8g01882 309 CDD ZnF_GATA 175 203 IPR000679 GO:0006355|GO:0043565
Phco8g01882 309 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 309 - -
Phco8g01882 309 MobiDBLite consensus disorder prediction 147 167 - -
Phco8g01882 309 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Phco8g01882 309 MobiDBLite consensus disorder prediction 231 266 - -
Phco8g01882 309 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Phco8g01882 309 SMART GATA_3 170 221 IPR000679 GO:0006355|GO:0043565
Phco8g01882 309 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Phco8g01882 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 210 - -
Phco8g01882 309 MobiDBLite consensus disorder prediction 247 261 - -
Phco8g01882 309 Gene3D - 171 268 IPR013088 GO:0006355|GO:0008270
Phco8g01882 309 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01882 Phco-Chr8 19831904 19833178 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco8g01882 GATA 3.9e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01882 8 19831904 19833178 Phco8g01882 8 19831904 19833178 ECH
Phco8g01882 8 19831904 19833178 Phco7g02743 7 46458888 46460261 PCT