Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01871 ATGGAAGACGCTGAAGAATGCATCACTGGGCTATGTTTGGGACTAGGAATGGGAGGGCATGTCCCAAAAAAGGGTAAACAGAAAGAGAAGAGGCCTGTGGCATGCCTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCACGATAAGGTAGAGAGCACTGACTCTGATAACAGCAACAACAACAACAACCGATGCAGAAAGAAACTGAGGCTTTCCAAGGACCAAGCATCCATGCTTGAGAACAGCTTCAAACTGCATACCACTCTTAATCCGGTTCAGAAACAAGCACTGGCTCATCAATTGAATTTAAAGACAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGAGCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAAGTACGTGCACTTAAGGTTGGATGCATTCAACTATCCAAAACGGCGACTCTGACTATGTGTTCTTCGTGCGAGAAACTAGTAAAACTGAATGAAGGAAAGAAGAATAATAATATAGAGTTAGAGGGTAGAAATTGA 606 0.4224 MEDAEECITGLCLGLGMGGHVPKKGKQKEKRPVACLDLAFELCPKGEAINLNHDKVESTDSDNSNNNNNRCRKKLRLSKDQASMLENSFKLHTTLNPVQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVEREWLKKQCQNLSDENKRLKKELQEVRALKVGCIQLSKTATLTMCSSCEKLVKLNEGKKNNNIELEGRN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01871 201 CDD homeodomain 72 129 IPR001356 GO:0003677
Phco8g01871 201 SUPERFAMILY Homeodomain-like 58 129 IPR009057 -
Phco8g01871 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 188 - -
Phco8g01871 201 Gene3D - 76 126 - -
Phco8g01871 201 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Phco8g01871 201 SMART HOX_1 70 132 IPR001356 GO:0003677
Phco8g01871 201 Pfam Homeodomain 72 126 IPR001356 GO:0003677
Phco8g01871 201 Coils Coil 120 161 - -
Phco8g01871 201 SMART halz 128 171 IPR003106 GO:0006355|GO:0043565
Phco8g01871 201 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01871 Phco-Chr8 19758672 19759783 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco8g01871 Homeodomain 4.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01871 8 19758672 19759783 Phco7g02747 7 46503895 46505060 PCT