Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01862 ATGGGGAATTGTTGGAGTTTTCAATCAGGTTCTGCTGTCGATCATCGAAACTCCAGTACTGCCCCCAATCAACCAGATGGTCCGGGGAGTATTCAGTTTTCTGCTGGTCTCAGCAACAAAAGGTTAATACAGAATAGTAATTCTACTTCTCTTGGGCATAGCAGCCACTCTGGAGGAATCAGCAGGTTCTTTGGACCAAGTAGTAGTAATAACTACTCAACAGGCAATAACACTAGCAAATCCTTTTGGGGCTCTGAGAATAGCCAAGCCTCTCGAGTCAGGGATGAAGAGGAGAGGGGGCAAATCTTGGATGTTGCAGATTTGAGAGAATTTTCTTTGGCAGACCTGAAAGCAGCCACCAGAAATTTCAGAGTTGACTCTCTGTTGGGGGAGGGCGGATTTGGTAAAGTATACAAGGGTTTGATTAGAGGTGAGGGGTTGGCTATTGCCATCAAGAAGTTGAATTCTGAAAGCAAGCAAGGATTTGTGGAATGGCAGTCAGAGATTAATTTCTTAGGGAGGCTTTCTCATCCCAACCTCGTTAAGTTGTTGGGATTTGGGAGGCATGATAGTAAACTGTTTCTGGTTTATGAATTTATGCCTCGTGGCAGCTTGGATAACCACCTATTTGGAAGAGGAGCAAATGTTCGTCCACTTTCTTGGGACACAAGGCTAGAAATTATGATTGGAGCAGCTAGGGGGTTGCATTTCCTTCACAGCTTGGAGATTCCGATTATATATAGAGATTTGAAACCCTCAAATATTCTACTCGACTCAACATATGCGGCTAAGTTATCAGATTTTGGCTTAGCGAAGTCTGTTGCTTCCCCTGATCAAAGTCACGTATCAACACAGGTTGTGGGAACATACGGCTATGCTGCTCCTGAGTACATTGTAACAGGCCGTTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTCTTTTGGTGGAGTTGCTGACTGGCAAGAGGATTAGTGGTATAATGAAACTATGTGAGGAAACGTCCCTGAGAGATTGGGTCAAAAGAAATCTTCTAAATAGAGGGCTTTTAAGAAGCACAATGGATACAAAGTTGGAAGGAAAGTATCCTTCTAACTTAGCATTACAAATGATTCAACTAGCTCTCAAATGCATCCAAACAGAACCCCAAGTGAGACCATCAATGAAAGAAGTTCTTGAAAGTCTGGAACAAATTGAAGCAGCCAATGAAAAACCAGCTGATAACAGAAGACAGGTTAATCGTTCTCGGGTTGTTCAACAACATGGCCGTGAAGATGTTGGCTAA 1287 0.4289 MGNCWSFQSGSAVDHRNSSTAPNQPDGPGSIQFSAGLSNKRLIQNSNSTSLGHSSHSGGISRFFGPSSSNNYSTGNNTSKSFWGSENSQASRVRDEEERGQILDVADLREFSLADLKAATRNFRVDSLLGEGGFGKVYKGLIRGEGLAIAIKKLNSESKQGFVEWQSEINFLGRLSHPNLVKLLGFGRHDSKLFLVYEFMPRGSLDNHLFGRGANVRPLSWDTRLEIMIGAARGLHFLHSLEIPIIYRDLKPSNILLDSTYAAKLSDFGLAKSVASPDQSHVSTQVVGTYGYAAPEYIVTGRLYVKSDVYGFGILLVELLTGKRISGIMKLCEETSLRDWVKRNLLNRGLLRSTMDTKLEGKYPSNLALQMIQLALKCIQTEPQVRPSMKEVLESLEQIEAANEKPADNRRQVNRSRVVQQHGREDVG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01862 428 MobiDBLite consensus disorder prediction 403 428 - -
Phco8g01862 428 MobiDBLite consensus disorder prediction 74 89 - -
Phco8g01862 428 ProSiteProfiles Protein kinase domain profile. 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01862 428 Pfam Protein kinase domain 124 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01862 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Phco8g01862 428 PANTHER OS01G0588500 PROTEIN-RELATED 81 400 - -
Phco8g01862 428 MobiDBLite consensus disorder prediction 74 95 - -
Phco8g01862 428 MobiDBLite consensus disorder prediction 1 34 - -
Phco8g01862 428 ProSitePatterns Protein kinases ATP-binding region signature. 129 153 IPR017441 GO:0005524
Phco8g01862 428 SMART serkin_6 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01862 428 Gene3D Phosphorylase Kinase; domain 1 107 199 - -
Phco8g01862 428 FunFam receptor-like protein kinase FERONIA 85 199 - -
Phco8g01862 428 Gene3D Transferase(Phosphotransferase) domain 1 200 424 - -
Phco8g01862 428 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 200 410 - -
Phco8g01862 428 SUPERFAMILY Protein kinase-like (PK-like) 108 400 IPR011009 -
Phco8g01862 428 CDD STKc_IRAK 129 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01862 Phco-Chr8 19687100 19689251 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g01862 Pkinase 6.6e-51 CL0016