Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01859 ATGCCACTAGATCTCGCAGCTGTTGCCAAGATCAGGATGGAAGAACAAACAGCCATTGAAGAAGCAGCTTCCGCTGGGTTGAAAAGTATGGAGCATCTCATTCGTGTCCTTTCCTCTCAAATCCCTTCTTCTTCCGCCACCGCCTCTTCTTCCACACACCACCGCCGTCTTAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGTCGCGCACCTTCCCATCCCTCTCCCTCCCCCTCTCTTCCTTCTCCACCGCAACCCCACTCTCAAAAACCCAGTCTTCCATTTGCAAACCCTAAAGTCAAGTCAAATCCCAATCCTAACCCTTCTTCCGCGGATTTCTCGCTCTCTCAATATTCCAAGACCAAAGACACCACCTTTACCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCCATCACGGCCGACGGAAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGCAAAAGGTGTCACGACGCCACCCTCTCCGCCGGGAAAGCCTCATCCTCCGCCAACTGTCATTGCTCCAAGAGAAGGAAATCCCGTCTGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGGTCGCCGATATCCCTGTGGACGAGTACTCCTGGAGAAAGTATGGTCAAAAACCCATCAAGGGATCACCCTACCCACGAGGCTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGGGCCCAGGATGACCCCAACATGCTTATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTCTGCCGGAAACCGCCGCCACCGCTGCAGTTGCTTTCGGTGCTCAGCCTGTTTAA 960 0.5521 MPLDLAAVAKIRMEEQTAIEEAASAGLKSMEHLIRVLSSQIPSSSATASSSTHHRRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSPSLPSPPQPHSQKPSLPFANPKVKSNPNPNPSSADFSLSQYSKTKDTTFTISPPISTTTSSFMSSITADGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKASSSANCHCSKRRKSRLKRMIRVPAISSKVADIPVDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETAATAAVAFGAQPV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01859 319 FunFam WRKY transcription factor 65 224 301 - -
Phco8g01859 319 Pfam Plant zinc cluster domain 194 238 IPR018872 -
Phco8g01859 319 MobiDBLite consensus disorder prediction 118 138 - -
Phco8g01859 319 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01859 319 Pfam WRKY DNA -binding domain 242 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01859 319 MobiDBLite consensus disorder prediction 90 138 - -
Phco8g01859 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 306 IPR044810 GO:0003700
Phco8g01859 319 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01859 319 MobiDBLite consensus disorder prediction 97 114 - -
Phco8g01859 319 SUPERFAMILY WRKY DNA-binding domain 238 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco8g01859 319 Gene3D WRKY domain 227 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01859 Phco-Chr8 19655035 19656226 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco8g01859 WRKY 2.3e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01859 8 19655035 19656226 Phco8g01859 8 19655035 19656226 ECH
Phco4g01141 4 9371419 9372757 Phco8g01859 8 19655035 19656226 PCT
Phco8g01859 8 19655035 19656226 Phco7g02752 7 46546849 46548061 PCT