Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01855 ATGGATAACGCTGATTCTGGTGTAGGCATGGATAGGTTGAAGCAGCCGGAGAAGAAGAAAAACACAGGGAGGAAGAAGATCGTGATAGAGAAGATTGAGAAGTCCAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAGTAGGGCTGTTCAAAAAAGCGAGTGAACTGTGCATTTTGTGCAATGTTAATGTAGCCATAATCGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCATCCAGACGTGGAAGCCATTGTCGGTAACTACCTGAAGGGAGCCAAAGTGTTGGTCCCATCAGTGTCGAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAATGAAGAGTTTGGCGTTGGAAAAGAAGAATCTGACAGAGACTGAAGCATTGGTTAAGGGTATGAGCAGAAGGTGGTGGGAGGACCCCATTGATCAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTCTCACTTTATGAGTTGAGGAAGAAATTAACGGAAAGGGCTGGTCAATTGTTCATGCTTTCAATTCAATGA 546 0.4414 MDNADSGVGMDRLKQPEKKKNTGRKKIVIEKIEKSSNKQVTFSKRRVGLFKKASELCILCNVNVAIIVFSPAEKLFCFGHPDVEAIVGNYLKGAKVLVPSVSRGSYEESNMQYEEAMKSLALEKKNLTETEALVKGMSRRWWEDPIDQMSERELEQFMVSLYELRKKLTERAGQLFMLSIQ 181
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01855 181 Gene3D - 35 103 IPR036879 GO:0003677|GO:0046983
Phco8g01855 181 PANTHER MADS BOX PROTEIN 24 170 - -
Phco8g01855 181 SUPERFAMILY SRF-like 23 92 IPR036879 GO:0003677|GO:0046983
Phco8g01855 181 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g01855 181 FunFam Agamous-like MADS-box protein AGL62 34 97 - -
Phco8g01855 181 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Phco8g01855 181 Coils Coil 110 130 - -
Phco8g01855 181 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Phco8g01855 181 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Phco8g01855 181 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Phco8g01855 181 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Phco8g01855 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco8g01855 Phco-Chr8 19602419 19602964 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco8g01855 SRF-TF 1.3e-23 No_clan