Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01844 ATGGACAATATTGATGAGGACTACGGCCATTTCTTTGACTCCTTCTTCCAAAACGAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGTTCTCCGGGTACTATGATTCAAGCTCGCCGGACGGTGGTGCTTCATCGGTGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCAGTGGTCCCCAATATCAGTAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGAACTTGCATGAACAAGAGAAAAGAATCAAAGCAGAGATTTTGAATTTTGAATCTGGGAAGCTGAAAAACCCAACCTATGAATTTGATCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACAGAAGAGGTATTTGATTCTGGCACTTCAAGAAATTCCCCAATTGAATTAATTGAGCTGACGGTTGCGTACATGAGAGAGAGGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGATCATTACAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATTGAGGGGGAAGAAGACGAGAAAGATATTTTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTGAATGGTCCTCAAAGCCCAATGACTGAATCTGATTTAGAATCCCAAGCTTCATACAAAACTAGATTCTTAGGGGATGGGGACTTCAAAGAGATAAAAAAGAACGTTGAGGAGGACCCAACGGTGGAAATGGGAGCACTGGTGGGGGTTGATCAAGATGATCCTCGGAGAAACATGGCCTCCATGTCACAGTGTTGCCAGCGTTCCCTTTCTTTGGCAAATTCTCACCTTCCATCACCGCTCACGGAGGAGTTACAGGCTCCATCTATGACGCTGGTGAGCACAGAGCAAAGGAACGATGCTTCAACCTCAAGAACGTTGGACTATGCCCCACGTTGGGTGAGGCCATCACGGTGTTGGAAAATAAAGAGTGATCTCATGATCTTTTTGGCACCATCATTCCATGGGAAGACCATTTCGTAG 1113 0.4429 MDNIDEDYGHFFDSFFQNEELDSWAMDEAAFSGYYDSSSPDGGASSVASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQNLHEQEKRIKAEILNFESGKLKNPTYEFDHDLPILLRSKKKRTEEVFDSGTSRNSPIELIELTVAYMRERTFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLLKTVFIEGEEDEKDILQIKIQTAISALNGPQSPMTESDLESQASYKTRFLGDGDFKEIKKNVEEDPTVEMGALVGVDQDDPRRNMASMSQCCQRSLSLANSHLPSPLTEELQAPSMTLVSTEQRNDASTSRTLDYAPRWVRPSRCWKIKSDLMIFLAPSFHGKTIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01844 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 107 IPR036638 GO:0046983
Phco8g01844 370 Gene3D - 45 111 IPR036638 GO:0046983
Phco8g01844 370 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 112 - -
Phco8g01844 370 Pfam Helix-loop-helix DNA-binding domain 53 95 IPR011598 GO:0046983
Phco8g01844 370 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 225 - -
Phco8g01844 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Phco8g01844 370 SMART finulus 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01844 Phco-Chr8 19381125 19389297 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01844 HLH 5.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01844 8 19381125 19389297 Phco8g01844 8 19381125 19389297 ECH
Phco8g01844 8 19381125 19389297 Phco7g02770 7 46791906 46797472 PCT