Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01840 ATGTCTTCGTGTTTGACCGGAGCTGGAGGAAGAACCTACGGATTCGATTTCGAATTTGTTAAATCTTCGTCTTCTTCCACCAGAACCTCACACACCTCTTCTTCACCTTCTTCAACAATCTCCGAATCCAGCAATTCGGCCCTCGCAATCTCCACCAAGAAACCCAGAACGCCTCGAAAGCGACCGAACCAAACCTACAATGAAGCCGCGGCGCTTCTCTCCACGGCCTACCCCAACCTCTTCTCCACGAAGAACCTCAAAACGCAGGGCAAATTCGCAAAGCCCGCATCGGAGAATTTCGATTATGACTCTTCGGAGCTGTTGTTGCCATTCAGGGTTTTGGACGGGTCGTCGTCGTGTTTCCTTCTGGACCAACCGGGCCCGAAGCCCATGGAGAGGCCCAAAGAGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCTGTAGTGAATTTCAATTCCCTAGAATTGAACGACGATTGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGACGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGGGTGCAAGATGTCTCAAACGACGCCGTCAATAACTTTCCCTGGATAATGCCTATTGGCGGGAAATCCGACTTCCCCAGACCCCGTGTCAGCGCTCTCCGACACGTCGACGACGGAAACTGGTGGAATTTTCCGGTCGTCGATATTCTTCAAATATCGCCCAAAATTATCACCAAGCCTCCTCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAGAAGGTGGCAGCGATTGCAGCGACGGAGAAACCGGTCGTAGTGGAGTTGAAAAACGTGGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTAAATTACGACGACGTTCGGAGCGCTTGGTCCGACCGTGGGATACCGTTCTCCGACGATAGCCCCCTGGCCGACTTGCCGGAATCTGACGTCACTGCGCGGCTGTCACAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGGTACAAAGAGAAGCGGCGAACGCGGCTGTTCTCGAAGAAGATCAGATACCAGGTGAGGAAGGTCAACGCAGATCGACGCCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTCAATTCTAGCTCAAATGCACACAGATGA 1176 0.5272 MSSCLTGAGGRTYGFDFEFVKSSSSSTRTSHTSSSPSSTISESSNSALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDYDSSELLLPFRVLDGSSSCFLLDQPGPKPMERPKEVSVQEKACGSPGEISSVVNFNSLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQDVSNDAVNNFPWIMPIGGKSDFPRPRVSALRHVDDGNWWNFPVVDILQISPKIITKPPPVTAEKKMKKKKVAAIAATEKPVVVELKNVELPKPKQGLMLKLNYDDVRSAWSDRGIPFSDDSPLADLPESDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01840 391 Pfam CCT motif 340 381 IPR010402 GO:0005515
Phco8g01840 391 MobiDBLite consensus disorder prediction 22 52 - -
Phco8g01840 391 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515
Phco8g01840 391 MobiDBLite consensus disorder prediction 22 63 - -
Phco8g01840 391 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01840 Phco-Chr8 19348040 19350415 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco8g01840 CCT 5.2e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01840 8 19348040 19350415 Phco8g01840 8 19348040 19350415 ECH
Phco8g01840 8 19348040 19350415 Phco7g02775 7 46841365 46842309 PCT