Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01837 ATGGTTGGTTTTGTTTCTTTTGCCTCAAACTCTTATGGGGTTAGACATTTGGATTCAAAGTCAAGGTCTTCTGGTTCGTGGTGTATTGGCCGTTTTGAGTACTTGGGGTATTTCGTGTGTTCCTCTGCTTATCACAATGTGAAGAAGACAAACGATAAAGGATCTAAAAAATCTGATCATTTGAAGGCACGTACGAAAGGGAATAAGGATAAAGTGAAAGTGGAATCAAAATCTCATACAAAAAATGTTGGCACTGATATATCAAGGAAAAGAGTTATCTCTTCCCTCAAGATCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAATTGATTACTGGACAAAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTTGAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGTGAGGTAAAGCTTAAAAAAATGAAGAGAAAGAGAAAGAAGAAAAGACAAAGGAATAATTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGACCAGAAAAGGAGCTTCAAAGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCGCTTGGTTCATTGAGTAGCATTGAAGATTCTGCAATTGCTCCAGATGGATCTGGTTGTCATGAACATATATTCTGTGCTAAGTGCAAAGTGCGAGAAGAACCTCCAGATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTGTGGACCCTCCTTTAGACACTGAAAATGTTCCTCCTGGAAGGCAGAACTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCCGATGATGAATATTCTCCAGTAGATGGTGTCAGTCATGAATATCTTTTTGTCAATAGCAGCATAGATTCGGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGCAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGTAGGGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAAGCACCCCAATAATGAGCAAAACAACATGACAAGAAAATATTCTTCTAGCACAAATATCAAGAGGCATTGTTTTAGGATTCCGCGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAACAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACTTAAGAGAATCACTTCCACAAAGAACTCCAGATTACAAAATCAGGAGAATACTGATCTTTTGAAATCAAAGACCTTGAAAATTACAAGTCATTCCGAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAACAAGGACTTAATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAGAAAGAAGAGGTTGGTAAGTTTTACATTTGAAGGAGATTCTCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCAAAAACTAGTTAGTATGAAGCAAAAATTAACAACAATTCAAAGTTTCAGCGTAAAGGGTTCAGATGAACCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAATTTGAATGA 2229 0.3903 MVGFVSFASNSYGVRHLDSKSRSSGSWCIGRFEYLGYFVCSSAYHNVKKTNDKGSKKSDHLKARTKGNKDKVKVESKSHTKNVGTDISRKRVISSLKIKGPRKDSSDKKLITGQKLPLKNRKSSQKPSLKLQGKKASLSSRKEGKDADGEVKLKKMKRKRKKKRQRNNLDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPDGSGCHEHIFCAKCKVREEPPDNDVIRCYGTCKRAFHQKCVDPPLDTENVPPGRQNWFCKFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEYSPVDGVSHEYLFVNSSIDSDESEDKACGRRQRKAVDYKQLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENKHPNNEQNNMTRKYSSSTNIKRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKNRKHQAEGAANQLKRITSTKNSRLQNQENTDLLKSKTLKITSHSEKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDLMEISDDVSLKKLLKKRKKRLVSFTFEGDSQTAELEFERLCKLKQKLVSMKQKLTTIQSFSVKGSDEPHSNEPSIVYVPTAVLREKFE 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01837 742 CDD homeodomain 519 580 IPR001356 GO:0003677
Phco8g01837 742 MobiDBLite consensus disorder prediction 387 405 - -
Phco8g01837 742 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 47 740 - -
Phco8g01837 742 SMART PHD_3 264 317 IPR001965 -
Phco8g01837 742 MobiDBLite consensus disorder prediction 586 612 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 502 516 - -
Phco8g01837 742 SUPERFAMILY Homeodomain-like 513 575 IPR009057 -
Phco8g01837 742 ProSitePatterns Zinc finger PHD-type signature. 265 316 IPR019786 -
Phco8g01837 742 SMART HOX_1 518 580 IPR001356 GO:0003677
Phco8g01837 742 MobiDBLite consensus disorder prediction 361 375 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 49 86 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 613 629 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 49 174 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 577 655 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 356 405 - -
Phco8g01837 742 FunFam pathogenesis-related homeodomain protein 518 582 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 117 135 - -
Phco8g01837 742 SUPERFAMILY FYVE/PHD zinc finger 256 322 IPR011011 -
Phco8g01837 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 328 IPR013083 -
Phco8g01837 742 ProSiteProfiles 'Homeobox' domain profile. 516 576 IPR001356 GO:0003677
Phco8g01837 742 ProSiteProfiles Zinc finger PHD-type profile. 262 319 IPR019787 -
Phco8g01837 742 Pfam PHD-finger 264 319 IPR019787 -
Phco8g01837 742 MobiDBLite consensus disorder prediction 493 516 - -
Phco8g01837 742 Pfam Homeodomain 527 571 IPR001356 GO:0003677
Phco8g01837 742 Gene3D - 499 583 - -
Phco8g01837 742 MobiDBLite consensus disorder prediction 136 153 - -
Phco8g01837 742 CDD PHD_PRHA_like 264 316 IPR045876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01837 Phco-Chr8 19314443 19319960 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Phco8g01837 Homeodomain 1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01837 8 19314443 19319960 Phco8g01837 8 19314443 19319960 ECH
Phco8g01837 8 19314443 19319960 Phco7g02776 7 46845660 46850331 PCT