Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01779 ATGAATTTCCATCCCAATACTTCTCTTCACCTAAGGCAACCAGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCTCCTTCACCTATAAGTCCCATCGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACACTGGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAATCTTACGGAACACAGGAGCAAAGATCAAACTTCAGCCCTTCACACCATCTTGGTCATGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGCGGAAGAAAAGAATACAGTTTTGGACCCAAAGAAGGGATGGCTTCCTGGTCAAGGGGTTATACTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 489 0.454 MNFHPNTSLHLRQPDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGTQEQRSNFSPSHHLGHALGVNVVDNQGQSYVRLGGRKEYSFGPKEGMASWSRGYTSEHVQEDIGQLDLSLRL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01779 162 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Phco8g01779 162 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 99 IPR044246 GO:0009788
Phco8g01779 162 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Phco8g01779 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Phco8g01779 162 Gene3D Classic Zinc Finger 38 103 - -
Phco8g01779 162 FunFam Zinc finger protein 2 26 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01779 Phco-Chr8 18475176 18475664 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco8g01779 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01779 8 18475176 18475664 Phco8g01779 8 18475176 18475664 ECH