Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01757 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGCCTCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGTGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTGTGGGTGTGCGAGGTCTGCGAGCAGGCCCCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGCGACTCTGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCTGTTGAGCCCTTCTTCGACTCCGCCGACTCCATCGTTAAGGCCTCCGCCACCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGGATCCTCCGATGCCTTCGCCCATGACGACCCCGACGCCGCCGCCTGGTTCATCCCCAACCCCAATTTCGGGTCGAAACTCATGGACGCCACTGACATGAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGATTTCGACTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTCCCCTCATTAATAACCACCACCAATCAGAAAGCTGCTTCGACATCGACTTTTGCCGCTCCAAGCTCTCCTCCTTCAACTACCCATCCCAGTCTCTCAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGATGGGAACACCGTGTCGGACATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCCGGAGTAAGTGGAGGGCAAGGGGCAACGCAATTGTGTGGAATGGACCGTGAAGCGAGGGTTCTGCGATACAGAGAGAAGAGAAAGAACCGAAAGTTTGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGGCGGTTCGCGAAGCGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGTCGCTGATGCTTGACAGTCCATACGGCGTCGTACCATCGTTTTATGATTCTGTGGGATTGATTATTAGAGAAAAAGGTGAAGAATCGGTACGAACGTGA 1173 0.5703 MGIERGGLKGFRSGWTVPPKPCDSCKLASAALFCRLDSAFLCIACDSKIHCANKLASRHERVWVCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASATASFGFIVPSDDATGSSDAFAHDDPDAAAWFIPNPNFGSKLMDATDMKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSLAPPLINNHHQSESCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAASLMLDSPYGVVPSFYDSVGLIIREKGEESVRT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01757 390 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Phco8g01757 390 CDD Bbox1_BBX-like 21 64 - -
Phco8g01757 390 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Phco8g01757 390 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Phco8g01757 390 Pfam CCT motif 300 342 IPR010402 GO:0005515
Phco8g01757 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 358 IPR045281 GO:0009909
Phco8g01757 390 SMART bboxneu5 65 107 IPR000315 GO:0008270
Phco8g01757 390 SMART bboxneu5 17 64 IPR000315 GO:0008270
Phco8g01757 390 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Phco8g01757 390 CDD Bbox1_BBX-like 64 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01757 Phco-Chr8 18242872 18244210 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco8g01757 zf-B_box 3.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01757 8 18242872 18244210 Phco8g01757 8 18242872 18244210 ECH