Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01754 ATGTTGCCAAAACTGTTTGTTCAAGCAAACTTAAAGTCAAAAGTTGGATTAGCCGGCCAAAGTCGTTCGGCCGGCACTAATTGCACGTGCCATTTGAGAGGACCAAAGCGACGGTTCTATACTTTAAAAGAGAAAAATTTGGTTGGACACAAGCTCCTTAACTTGTTCACCATTTCGTCCCATCACATTGTGTCAATTATGGGATCCTCATTCAGTTGCTGTGGCTCAGAGAGGGTCGACGAAGTGTCCACATCATTTGGCGTAGTTAACAATTCATGGAGAATATTCACGTACAAGGAATTGCATGCGGCTACCAACGGATTCAGCGATGATAACAAGCTTGGGGAAGGTGGTTTTGGAAGTGTGTACTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTAAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTGGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTCATAGTGTATGATTACATGCCAAATCTCAGCCTGATTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTTGAACTCAACTGGCAAAGGAGAATGAACATTGCAATTGGCTCTGCAGAAGGCCTTCTGTACTTGCACCGTGAGGTCACACCCCACATCATACACAGGGACGTAAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGTCATATGACTACCCGTGTGAAGGGTACGTTGGGATACTTGGCACCTGAATATGCGATGTGGGGCAAGGTCTCGGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTCTTGGAACTTATAAGTGGAAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAAGCAAAGGAAAGTTCAGGGACCTGGTTGATCCAAAACTGAGAGGGAACTTTGATGAAAACCAATTGAAACAAGCAATCAATGTGGCTGCTCTTTGCGTGCAGAGTGAGCCCGAGAAACGACCCAACATGAAGCAAGTGGTTAACCTTCTTAAAGGGTATGAATCTGAAGAGAAGAAAGTGAGTGTGACGAGAATAGACAGTATCAAGTATAATGAAGAACTATTGGCACTTGATCAGCCTAGTGACGAAGAACCTGATGATGCAAGTGCTAGTTATGGTGTTTTCAGCGCCATTGAAGTCCAAAACATGAAGGATCCATATAAGCGCGGTTATTACAAGAACATCGCCTAA 1338 0.4439 MLPKLFVQANLKSKVGLAGQSRSAGTNCTCHLRGPKRRFYTLKEKNLVGHKLLNLFTISSHHIVSIMGSSFSCCGSERVDEVSTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLISHLHGQFAVEVELNWQRRMNIAIGSAEGLLYLHREVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELISGRKPIEKLPGGLKRTITEWAEPLISKGKFRDLVDPKLRGNFDENQLKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESEEKKVSVTRIDSIKYNEELLALDQPSDEEPDDASASYGVFSAIEVQNMKDPYKRGYYKNIA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01754 445 Gene3D Transferase(Phosphotransferase) domain 1 184 403 - -
Phco8g01754 445 SMART serkin_6 108 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01754 445 FunFam PTI1-like tyrosine-protein kinase At3g15890 80 183 - -
Phco8g01754 445 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Phco8g01754 445 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Phco8g01754 445 FunFam PTI1-like tyrosine-protein kinase At3g15890 184 397 - -
Phco8g01754 445 Pfam Protein tyrosine and serine/threonine kinase 111 379 IPR001245 GO:0004672|GO:0006468
Phco8g01754 445 ProSiteProfiles Protein kinase domain profile. 108 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01754 445 CDD STKc_IRAK 114 381 - -
Phco8g01754 445 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Phco8g01754 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Phco8g01754 445 PANTHER OS01G0253100 PROTEIN 77 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01754 Phco-Chr8 18203482 18205805 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Phco8g01754 PK_Tyr_Ser-Thr 1.8e-42 CL0016