Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01707 ATGGCTCCGCACTTCCTCTTTCTCCTCTTCTTCCTCTCTCTTTCCTCTGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTTAATGATCCTCACGGCGTCTTGAACAACTGGGATGAATACTCCGTCGACGCTTGCAGCTGGACCATGATCACTTGCTCTTCTGATGACCTTGTCATAGGCCTAGGAGCGCCTAGCCAATCTCTCTCTGGAACTTTCTCTCCAGCAATCGGAAATCTAACAAATCTTCGACAAGTATTGCTGCAGAACAACAATATCTCAGGCAATATACCACCCGAACTTGGAGCGCTTCCCAAACTTCAGACATTAGACCTTTCCAATAACCTATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGATCTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCAACCAGATCATTCAATATTGTGGGGAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCGGCAACCCTCATACCAATTTCCTTCTCGCAAGTGTCATCAGAAGGAAAACACAAGTCCAAAAATCTAGCAATAGCACTTGGGATCAGTCTTAGTTGTGCTTCTCTCATCCTCCTGCTTTTTGGGCTATTTTGGTACAGAAAGAAACGACAGCACGGAGCCATCCTGTATATCAGTGATTATAAGGAAGAAGGAGTTCTTAGCTTGGGGAATCTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATAGGGGGAAGTTTGGAGATGGCACGATGGTGGCGGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCTGGCGAATCACAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGCTATTGTGCTACGTCTAATGAGAAACTTTTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACTAGAAAGAGGATAGCTATTGGAGCTGCCAGAGGCCTTCTGTATTTGCACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCCGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCTGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACCGGAATGACAGCGCTTGAGTTTGGGAAAACTGTAAATCAGAAGGGTGCTATGCTAGAGTGGGTTAGAAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTATGGTAATAACGACATCAACCCCAGCCACAGCAACAATGGCAGCGATAGTTCATCCCGCCCTACCTCTGCTTTGAAACATGATGATGATGTTCATGACCGTTCCAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGGTGA 1905 0.4551 MAPHFLFLLFFLSLSSASQPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWTMITCSSDDLVIGLGAPSQSLSGTFSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNLFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPTRSFNIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKNLAIALGISLSCASLILLLFGLFWYRKKRQHGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATSNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNNDINPSHSNNGSDSSSRPTSALKHDDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01707 634 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
Phco8g01707 634 Pfam Leucine rich repeat 112 172 IPR001611 GO:0005515
Phco8g01707 634 SUPERFAMILY L domain-like 21 191 - -
Phco8g01707 634 ProSiteProfiles Protein kinase domain profile. 290 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01707 634 FunFam Somatic embryogenesis receptor kinase 1 260 366 - -
Phco8g01707 634 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 569 - -
Phco8g01707 634 MobiDBLite consensus disorder prediction 575 594 - -
Phco8g01707 634 MobiDBLite consensus disorder prediction 575 634 - -
Phco8g01707 634 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Phco8g01707 634 Gene3D Ribonuclease Inhibitor 21 203 IPR032675 -
Phco8g01707 634 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Phco8g01707 634 Pfam Protein kinase domain 291 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01707 634 MobiDBLite consensus disorder prediction 595 614 - -
Phco8g01707 634 SMART serkin_6 290 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01707 634 FunFam Somatic embryogenesis receptor-like kinase 1 367 578 - -
Phco8g01707 634 SUPERFAMILY Protein kinase-like (PK-like) 272 560 IPR011009 -
Phco8g01707 634 Gene3D Transferase(Phosphotransferase) domain 1 367 577 - -
Phco8g01707 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Phco8g01707 634 FunFam Putative LRR receptor-like serine/threonine-protein kinase 21 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01707 Phco-Chr8 17601109 17605600 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco8g01707 Pkinase 3.7e-41 CL0016