Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01693 ATGATGGGCTTGTTTAGTTTAGCAGTGTTCCTATTTTTCTTTCTGGATACTGTTCATTCTACAGTTCTTAAGAAAGAAAATGCTAGCATCGTGAATGGAAAAAAATCACTTGTTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTAGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTCAGGTGTGAGATGCAACAATGCAAGCGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACCATTTCCCCTGCTCTTGCTAACCTCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCAGATTCCAAAAGAAATAGGCCATTTGGTTCAGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTTGAGGGTCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGGACTACCTTGACTTACGAAGCAATCGTCTTGAGGGAGAGATCCCCCCATCACTCTTCTGCAATGGGACTTCACTGGGTTATGTAGACCTCTCTAACAATTCCTTAGGGGGCCAAATCCCCTTGAATAAAGAGTGTATCCTTAAAGAACTCCAGTTCTTATTGCTTTGGTCTAACAAGCTTTTAGGAAAAGTTCCTTTAGCACTTTCAAATTCTACCAAACTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAGCTTCCTTCTAAGATTGTAAGTAACTGGCCACAACTACAATTCCTCTACTTGTCATACAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAGCCTTTCTTTGCTTCCTTGGTGAATTTATCACACTTTCAAGAACTTGAATTGGCGGGAAACAATCTTGGTGGAAAGCTGCCTCATAGTATTGGTGAGCTTCCTACCAGCTTGCAACAACTCCACCTAGAAAAAAATTTCATATATGGCTCCATACCTCCTAGTATTGCCAACCTTGTCAACCTGAATTTCTTGAAGTTGTCCAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCAGCCATATGAATAGGCTAGAAAGAATTTATTTGTCAAATAATTCACTATCTGGTGAGATTCCTTCAACCCTTGGCGGCATTCAGCATCTGGGACTTCTTGACTTGTCAAGAAACATGCTTTCTGGCCCAATACCAGATAGTTTTGCAAATCTCACCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCAGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTCTAGACTTATCTCACAACAACATAACTGGGTTGATTCCGGCAGAAGTTGCAGCCTTGGATAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTACATGGGTCTTTACCATTAGAACTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCATTGAATAACCTCTCTGGCAGCATCCCACCACAGCTGGAAAGTTGCATAGCACTTGAGTACCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTCTATATTAGAGCACTTGACGTGTCTTTAAATCAGTTGACTGGGGCAATACCACAGTCCATGCAGTTGTCTCCCTCCCTGAAGGAACTTAATTTCTCTTTCAACAAATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAACCTTACCATAGACTCTTTCCTGGGAAATCGTGGTCTCTGTGGCCCGTTTAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCTGTGTCACTATTTGGCACCCCTCTCCTATGCATACTTTTTAGGTACCCAATGGTAATGAAATCAAGAGTTAAAAAAGGAATTGCAATTTTTAGCAGAGGTGATTTGGAGAATGTAGAAGAGGCAGCAAATGAGGTAAAGTACCCAAGAATTACATATGAACAACTAAAAGAAGCCACCGGAGGCTTCAGTGCTTCAAGCTTAATTGGTTCGGGCCGGTTTGGACAGGTCTACGAAGGAATGCTCCAAGATAATACAAGAGTAGCTGTGAAAGTGTTGGACACAACACATGGTGAGATTTCAAGGAGTTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATTTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATAATAGCCTTGAGAGGCACCTATATCCAAGCCAAAGATTGAATGTGGTTCAATTACTAAGAATCTGCAGTGATGTAGCTGAGGGCATGGCCTATCTGCACCATTACTCTCCGGTGAAAGTAGTGCATTGTGATCTTAAACCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGATTACTGATTTTGGAATTTCAAGGCTTCTACAAAGTGATGAGAATACATCCACCAGTACCTCATCTTTCAGTTCAACAAATGCTTTGTTATATGGCTCGGTTGGTTATATTGCTCCCGAATACGGAATGGGAAAAGATGCTTCAACTGAGGGAGATGTTTACAGTTTTGGAGTAGTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGATGTACTCAGCCATGAAGGCTCAAGCTTGTGTGAGTGGCTCAAAAAACTATACACACAACCACACCACCTTCAAAACTTTGTTCAACAAGCACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAACCCTCACAACAAAGTTTGGAGAGATGTTATTCTGGAACTCATTGAGCTAGGGCTAATCTGCACTCAGCACAACCCTTCAACAAGACCAACCATGCACGATATAGCACAAGAAATGGAGAGGTTAAAGGACTACCTCACTAAGTCAACCTCTCATTCAAGTCAACCCCAACGTTAA 2919 0.4118 MMGLFSLAVFLFFFLDTVHSTVLKKENASIVNGKKSLVSFMSGIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANLSSLQILDLSGNFLVGQIPKEIGHLVQLRQLSLSGNFLEGHIPSEFGSLHNLDYLDLRSNRLEGEIPPSLFCNGTSLGYVDLSNNSLGGQIPLNKECILKELQFLLLWSNKLLGKVPLALSNSTKLKWLDLGLNMLSGELPSKIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHSIGELPTSLQQLHLEKNFIYGSIPPSIANLVNLNFLKLSSNLINGSIPPSLSHMNRLERIYLSNNSLSGEIPSTLGGIQHLGLLDLSRNMLSGPIPDSFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNNITGLIPAEVAALDSLKLYLNLSNNNLHGSLPLELSKMDMVLAIDLSLNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSLNQLTGAIPQSMQLSPSLKELNFSFNKFSGKVSNKGAFSNLTIDSFLGNRGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPLLCILFRYPMVMKSRVKKGIAIFSRGDLENVEEAANEVKYPRITYEQLKEATGGFSASSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNNSLERHLYPSQRLNVVQLLRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDEDMTALITDFGISRLLQSDENTSTSTSSFSSTNALLYGSVGYIAPEYGMGKDASTEGDVYSFGVVVLEMVSGRRPTDVLSHEGSSLCEWLKKLYTQPHHLQNFVQQALQRCYPFGLPNPHNKVWRDVILELIELGLICTQHNPSTRPTMHDIAQEMERLKDYLTKSTSHSSQPQR 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01693 972 Pfam Leucine Rich Repeat 352 372 IPR001611 GO:0005515
Phco8g01693 972 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Phco8g01693 972 Pfam Leucine Rich Repeat 498 517 IPR001611 GO:0005515
Phco8g01693 972 PANTHER RECEPTOR-LIKE PROTEIN 55 316 956 - -
Phco8g01693 972 ProSiteProfiles Leucine-rich repeat profile. 148 170 IPR001611 GO:0005515
Phco8g01693 972 SUPERFAMILY L domain-like 40 261 - -
Phco8g01693 972 SUPERFAMILY Protein kinase-like (PK-like) 646 953 IPR011009 -
Phco8g01693 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Phco8g01693 972 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Phco8g01693 972 Gene3D Phosphorylase Kinase; domain 1 645 740 - -
Phco8g01693 972 SUPERFAMILY L domain-like 332 582 - -
Phco8g01693 972 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 966 - -
Phco8g01693 972 SMART LRR_typ_2 122 145 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 326 350 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 277 301 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 398 422 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 98 121 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 146 170 IPR003591 -
Phco8g01693 972 SMART LRR_typ_2 423 445 IPR003591 -
Phco8g01693 972 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 379 594 - -
Phco8g01693 972 Gene3D Ribonuclease Inhibitor 196 593 IPR032675 -
Phco8g01693 972 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Phco8g01693 972 Pfam Leucine Rich repeats (2 copies) 399 438 IPR025875 -
Phco8g01693 972 CDD STKc_IRAK 672 956 - -
Phco8g01693 972 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 194 - -
Phco8g01693 972 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 367 - -
Phco8g01693 972 Gene3D Transferase(Phosphotransferase) domain 1 742 971 - -
Phco8g01693 972 SMART serkin_6 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01693 972 SUPERFAMILY L domain-like 270 363 - -
Phco8g01693 972 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Phco8g01693 972 Pfam Protein kinase domain 668 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01693 972 Gene3D Ribonuclease Inhibitor 32 195 IPR032675 -
Phco8g01693 972 ProSiteProfiles Protein kinase domain profile. 666 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01693 Phco-Chr8 17460912 17464104 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco8g01693 Pkinase 2.4e-44 CL0016