Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01664 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTCTTGTTCAAGCATTTGGCGTCTCAGCAACCAAATACCGATGGGTTCTTTGTATCTGAGTTCTTGAAAAATACGAGTTTAACATCCTCAAAAACCTACAATTTCTCTGCTTCTGTCTGTTCATGGCGAGGGGTTTCTTGTGATGCCGATAGAGAACATGTTCTTCACTTGGTCTTTTCCGGTATGGACCTCTCTGGCACTATACCTGATAACACCATAGGCAAGCTAGCTAAACTTCAATCTTTGGATCTTAGCCACAACAAAATCACTGGCTTGCCTTCAGATTTTTGGAGCTTAAGCTCCCTCAAGAACCTTAACCTCTCCTCGAATCATATTTCTGGTTCATTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATCTCTCTGGGGAAATTCCTGAAACTGTTTGCTCACTGCTGAGTCTACGGGTCTTCAAACTCGACCACAACAGGTTTGCACACAACATACCTTCTGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCGATGGAACACTCCCAGAAGGTTTTGGTGCTGCTTTTCCTAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTGTACGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCGTTGTGGACGTGTTTCAGGGAATGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTGTACAACTTTAGTGGTTACAATTGGTCTCATCTAGTTTACCTGGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAAAATTTGAACGAGTCCTTGAATTTAAAGCACATTAATCTTGCTCACAATAGATTTACCATACAGAAATTGCCCCAAATTGAAATGCTACTGAATTTGGAATATCTGAACTTGTCCAAAACTAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAATTTGAATGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCTTCACTGAGGAATGAAAACCTCCAAGTCCTAGACCTCTCAAACAACAATTTGACCGGAGCAGTCCCTCAATCTGTCTTGGACAAACTCCCACGGATGGAGAAATACAACTTCTCTTATAATAACCTAACCCTTTGTGCTTCTGAAATCAAACCTGAGATCCTGCAAACATCATTCTTTGGATCACTGAACAGTTGTCCAATTGCTGCAAACCCGCGACTCTTCAAAAGAAGAGACACTGGACACACGGGAATGAAGCTAGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTTGCTGGGCTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAGCAATCTTCATACAAAGAGGAACAAAACATTTCGGGTCCCTTTTCATTCCAGACTGATTCAACGACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGGGGCACCCTTTTGGCTGAGGGAAAATTTGGGCCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCATGTGGCCGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGACGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCGAATCTTGTTCCCTTAACTGGATATTGTGTAGCTGGGGACCAAAGAATTGCCATATATGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCGCTTGGGGTACAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGCTACTCACATCTTGGACATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCGTTGGCATTTTTGCATCACGGTTGCTCCCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGACTATGACTTGGAGCCAAGGTTGTCTGATTTTGGACTGGCCAAGATTTTTGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCAGAGTTTACTCAACCAGAATTGGACACCCCAACCCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTCTTTGAGCTAGTAACTGGAAAGAAGCCAGTTGGAGATGAGTACCCTGATGATAAAGAGGCAACTTTGGTGAGTTGGGTCAGAGGACTTGTGAGAAAGAACCAAGCTTCAAGAGCTATTGATCCAAAAATTCGTGACACAGGACCAGATGAACAAATGGAAGAGGCTCTTAAGATTGCTTATCTTTGCACTGCTGACCATCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTAAAGGATATTGAACCTACTGCTGATTAG 2565 0.4308 MGLGVFGSVLVLVLLFKHLASQQPNTDGFFVSEFLKNTSLTSSKTYNFSASVCSWRGVSCDADREHVLHLVFSGMDLSGTIPDNTIGKLAKLQSLDLSHNKITGLPSDFWSLSSLKNLNLSSNHISGSLTSNIGNFGLLESIDLSSNNLSGEIPETVCSLLSLRVFKLDHNRFAHNIPSGILKCQSLVSIDLSSNQLDGTLPEGFGAAFPKLRILNLAGNNLYGRVSDISGLKSIANLNISGNSFQGSVVDVFQGMLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQNLNESLNLKHINLAHNRFTIQKLPQIEMLLNLEYLNLSKTSLVGEIPGKISQLSNLNALDLSLNHLSGKIPSLRNENLQVLDLSNNNLTGAVPQSVLDKLPRMEKYNFSYNNLTLCASEIKPEILQTSFFGSLNSCPIAANPRLFKRRDTGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNAGSEGLLTSWTFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFTQPELDTPTPKSDVYCFGVVLFELVTGKKPVGDEYPDDKEATLVSWVRGLVRKNQASRAIDPKIRDTGPDEQMEEALKIAYLCTADHPFKRPSMQQIVGLLKDIEPTAD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01664 854 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Phco8g01664 854 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Phco8g01664 854 SUPERFAMILY L domain-like 229 416 - -
Phco8g01664 854 SUPERFAMILY L domain-like 40 278 - -
Phco8g01664 854 SUPERFAMILY Protein kinase-like (PK-like) 525 846 IPR011009 -
Phco8g01664 854 Gene3D Ribonuclease Inhibitor 178 277 IPR032675 -
Phco8g01664 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01664 854 ProSiteProfiles Leucine-rich repeat profile. 379 400 IPR001611 GO:0005515
Phco8g01664 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Phco8g01664 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 849 - -
Phco8g01664 854 Pfam Protein tyrosine and serine/threonine kinase 552 845 IPR001245 GO:0004672|GO:0006468
Phco8g01664 854 FunFam Nuclear pore complex protein NUP107 29 179 - -
Phco8g01664 854 Pfam Leucine Rich Repeat 379 397 IPR001611 GO:0005515
Phco8g01664 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Phco8g01664 854 SMART LRR_typ_2 89 111 IPR003591 -
Phco8g01664 854 SMART LRR_typ_2 209 232 IPR003591 -
Phco8g01664 854 SMART LRR_typ_2 112 136 IPR003591 -
Phco8g01664 854 SMART LRR_typ_2 378 401 IPR003591 -
Phco8g01664 854 SMART LRR_typ_2 160 184 IPR003591 -
Phco8g01664 854 PRINTS Leucine-rich repeat signature 355 368 - -
Phco8g01664 854 PRINTS Leucine-rich repeat signature 92 105 - -
Phco8g01664 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 374 - -
Phco8g01664 854 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Phco8g01664 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Phco8g01664 854 Gene3D Ribonuclease Inhibitor 278 444 IPR032675 -
Phco8g01664 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01664 Phco-Chr8 17197658 17200222 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Phco8g01664 PK_Tyr_Ser-Thr 1.3e-31 CL0016