Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01657 ATGAGTGAGAAAGAGAAAGGAGTGAGCGAGGGATCGACGTTGCTGCACGGGAAGTACGAGCTGGGGAGGGTGTTGGGGCATGGAACGTTCGCCAAGGTGTACCACGCGCGGAACCTGAAGACGGGGGAGAACGTGGCGATGAAGGTGGTGGGGAAGGAGAAGGTGATAAAAGTGGGGATGATGGAGCAGGTAAAGAGGGAGATCTCGGTTATGAAGATGGTGAAGCACTCAAACATCGTGGAACTCCACGAAGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGAGAGCTCTTTAACAAGGTCTCCAAAGGTCGATTGAAGGAGGACGTCGCCAGACTCTACTTCCAGCAGTTGATTTCCGCCGTCGACTTCTGCCACAGCCGCGGTGTCTACCATCGCGACCTCAAGCCGGAGAACCTCCTCCTCGGCGAACACGGCAACCTCAAGGTCTCCGACTTCGGACTCACCGCCTTCGCCGACCACCTCAAAGAGGATGGGCTGCTGCACACCACGTGCGGCACGCCCGCGTACGTGTCGCCGGAGGTCATAGCGAAAAAAGGGTATGACGGTGCCAAGGCTGATATATGGTCATGTGGGGTTATCCTCTACGTGCTCCTCGCAGGGTTTTTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAGAAAATTTACCGAGGGGACTTCAAGTGTCCACCTTGGTTTTCCGTCGAGGCGCGAAGGCTTGTTACCAGACTCCTCGACCCCAACCCGAATACCCGGATTAGTATCAGTAAAGTCATGGAGTCTTCCTGGTTTAAGAAACCGGTGCCGAGAAAGGTGGAAGACGTGGCGGAGATGGATTTGGAGGAGAAGTGTGAGAGGCCCGCCACGATGAACGCGTTTCACATAATCTCGTTGTCAGAGGGGTTCGATTTGTCGCCCCTGTTTGAGGAGAAGAAGAGGGAGGAGATGAGGTTCGCGACGGCAGGGACGCCCAGCAGCGTGATATCGCGGCTAGAGGAGGTGGCGAAGGCGGGGAAGTTCGATGTGAGAAGTAGCGAGACGAGGGTGAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGAAAGCTGGCGATTGCGGCGGATATTTACGCCGTGACACCGTCGTTTATGGTGGTTGAAGTGAAGAAGGACAACGGGGATACCTTGGAGTACAACCAGTTCTGCAGCAAGCAGCTTCGTCCTGCGCTTAAAGACATCTTCTGGAATTCCCCACAGAATTCCACACCTGCCATAGTGCTTGAATGA 1290 0.5519 MSEKEKGVSEGSTLLHGKYELGRVLGHGTFAKVYHARNLKTGENVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHSNIVELHEVMASKSKIYIAMELVRGGELFNKVSKGRLKEDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLGEHGNLKVSDFGLTAFADHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTRLLDPNPNTRISISKVMESSWFKKPVPRKVEDVAEMDLEEKCERPATMNAFHIISLSEGFDLSPLFEEKKREEMRFATAGTPSSVISRLEEVAKAGKFDVRSSETRVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSPQNSTPAIVLE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01657 429 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Phco8g01657 429 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Phco8g01657 429 FunFam Non-specific serine/threonine protein kinase 294 416 - -
Phco8g01657 429 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01657 429 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01657 429 Gene3D Phosphorylase Kinase; domain 1 13 98 - -
Phco8g01657 429 Gene3D Kinase associated domain 1, KA1 293 417 - -
Phco8g01657 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 412 - -
Phco8g01657 429 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Phco8g01657 429 Pfam NAF domain 296 352 IPR004041 GO:0007165
Phco8g01657 429 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Phco8g01657 429 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01657 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Phco8g01657 429 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Phco8g01657 429 FunFam Non-specific serine/threonine protein kinase 9 298 - -
Phco8g01657 429 CDD CIPK_C 300 412 - -
Phco8g01657 429 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01657 Phco-Chr8 17110642 17111931 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco8g01657 Pkinase 1.7e-71 CL0016