Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01654 ATGCAACCTTGTAGTGGAGAAATGCAAGGCCCTAACAATAACTCTCTCTGTAACAACCAGCAACAGATTCAGTTTGACGCAGCTTCCAACGATGATTTCCTCAAACAAATGCTTTCCAACCTTCCGTCTTCTCCATGGACACTAGACCCCAAACCAAACCCCAACCCCTTGTGGGACCCTAATTCCGACGAAACCACACCGGATAATAACGTCCTTTACCCCTACGACCTCCAACAAGCCAACTTGGCCTCCAAGTTTCGCAACCACCACATCACCGATGACAAAGCCTCCGCTCTAATGCTCCAACACCACCAACTCCTCCTCTCCTCCGCCGCCGCCAATTCCCCCCTCCTCCAAATGCCCGTCTCCTCGCTAAACGACGTCGTTCATGCCCCCTCCTTCAAATCTCCCGCTCCAAACGCTGACCCTTCTTCTGTTCAACCTCTCTACAACTCCTTCTCCGCCTCTCTCCAAGGCGCTGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTTCTCAACAGGGGCAGAGTTTTGGAGCTTCGGCTCCGGCGAGTGGTGCTTCCGGTCAGCCGAAGCAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTACAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATAATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCCGCTGTGGCACCCCTTGTTGCAGATATATCTTCGGAGGGAGGCGGTGACTGCGTTCAACCAAAAAGCAACAACGCCAACGGTAACTCGAACGACACCCTAGCCACGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAAGACATGGGGTCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCTCTGGCCACAGCCATCTCCAAAGCCACGTGTCACGCCAGGAACCCTTTCATCAACGGTGATGGGCCCTCCTCTCCCGGAATGTCCGCGCTCACCCTCCACTCTTCAACTCTCAGCAATGGCCTCGTGAAAGACGCCGCCTCCGTTTCCAAGTCCTGA 1155 0.5446 MQPCSGEMQGPNNNSLCNNQQQIQFDAASNDDFLKQMLSNLPSSPWTLDPKPNPNPLWDPNSDETTPDNNVLYPYDLQQANLASKFRNHHITDDKASALMLQHHQLLLSSAAANSPLLQMPVSSLNDVVHAPSFKSPAPNADPSSVQPLYNSFSASLQGAAQPSNQTHHFQLSQQGQSFGASAPASGASGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGDCVQPKSNNANGNSNDTLATTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHARNPFINGDGPSSPGMSALTLHSSTLSNGLVKDAASVSKS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01654 384 Pfam Helix-loop-helix DNA-binding domain 207 252 IPR011598 GO:0046983
Phco8g01654 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Phco8g01654 384 Gene3D - 197 259 IPR036638 GO:0046983
Phco8g01654 384 MobiDBLite consensus disorder prediction 38 69 - -
Phco8g01654 384 MobiDBLite consensus disorder prediction 160 209 - -
Phco8g01654 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Phco8g01654 384 FunFam Transcription factor bHLH66 199 264 - -
Phco8g01654 384 SMART finulus 208 257 IPR011598 GO:0046983
Phco8g01654 384 MobiDBLite consensus disorder prediction 160 189 - -
Phco8g01654 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01654 Phco-Chr8 17069486 17072299 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01654 HLH 1.4e-09 No_clan