Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01641 ATGATTTGTGTTTTGTATTTTTCTTTGGTGTTTGAATTGAATCCGTTCACTGGTTCTTGGTTCACTTCATTGCCTATTTCTATTGGTTTAGGCCCTGAAAACAAGTTATTGTTTAAGATGGAGGAGGAAGACCATTTTCCTGTGGGTTTGCGTGTACTTGCCGTTGACGACGACCGAACGTATCTCACAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATAATGTTACTGCGACTACTGAAGCAGTCAAGGCGCTAGAAATGCTGAGAAAAAACAGAAACATGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGCATGTCGGACTTGAGACGGACCTACCCGTTATCATGTTGTCAGGATACGGTGACAAAGAGCGGGTGATGAAAGGTGTCATATATGGTGCTTGTGACTTTTTAACGAAACCAGTTCGAATTCAAGAGTTGCAGAACATATGGCAACATGTAGTGCGGAGGAAGATTGATAGCAAGGATAAGAATAAGACAGCAAGTGAGGAAATAAACTGCAGTATGTCTGGTAAGGTTGCAAATGAGGAGGAACCATGCACTATTGCTAAGGAATGTAGTCAAGCCTTGGCACCAAAAACTAATGCTGACCAGAATATAAAAGGGGATCATAAAAGGAAAGAACCGTGTGAGGCTGAGGAAGTGGAAGATGATAAAGAGAACGATGAACCCTCCAATCAGAAGAAATCTCGTTTAGTTTGGGATGCCGAGTTGCACAACAAATTTCTTGCTGCCATTAATCAGCTGGGAATTGACAAGGCTTTCCCCAAGAAGATACTTGACTTGATGAATATTGAAGGACTTTCAAGAGAAAACGTAGCAAGTCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCCAATCCTTACCACCGTATGGGTTCAGTTGATTGCTTTCGCCCTTCATCTGAATCAGGAGCCATGTTAAGCACCACATTACCGTCATATGCATATGCAAATGCACCTGGTGGAAGGTTTAGTGTGTTAAACGCTCCATCCAGCTTGAACACCAGAGGAATGAACTCATCTGCAATTGTTCAAGCTGCTCAGTCTCTAAACATTAACAGCAGCTGCATAAAAACACATGGAAACATGCACTCGTCCATATTTTCTGCAAATCAAACCTCAAGCTTATTGCAGGGCATTCCAACATCAATCGAGGCTAACCAATTTAAGCCCAACAACTCTCCAGCTGGTATTAGGAGGTTTAATCTACTTGATCGCTCAACTGGATTTAAAGATTTCTCTAGTTTCTCGGAAAATAGAGCCACTGTTAGAAATGCAGCGAATGTTTCTCTTCCTGGTTTCTCAAATAATCATTTACTTTTTCAAGGAATTTCCCAACTTACACATCATTCTGAAGCATTTAGAAATCATTCTTCTTTTGGATCTGCTGCTGTGAAAGCACAATCTTTTGATCCAAACTCCTGTGGTTGGTCTAAAATGGGGGATGATTATAATAATAAAAGCTGGCAGGGAGCAGCTCCGATATCTAGCTTTCCTTCCAGTACTTCTGCTGTCAGTAACGTTTTCAATAATGATCAACTGCTTCAGCAGAACTTCAAATTGTCCTCATCCACTTTTTGCAGTAGGAACAGCCCAGTTGGTTTTTCTTCCAGTGTTCCTTTGGAGGATGATGTCCTAGGCGAGATGCTACACCAAGAAGGCTTACATGGGAATATCTTACTAGCTTCATCTTACACCCAGCATAACAAGGGAGGTTGCAGCAAAGACATAAGTCAAACCTTCAATTCCATAAATCCTGTCATTTCTTCTAACGGAGGCACTAGTTCCTTGGGACATTGCTATGACCAAAACAATACAGTTGACAATAAGAGAATTGATGCATCTTTGGTTGGCCAAATGAATGGGGTTAATCCTTCAATCACACAGTCTAGTGAAGGTGAGAATTTCTATTCAATGAAGTCAAATGATGCGTACGTTTTGCAGAGCATGAAATCCGGCGAAGGACTCCTGCCTAATAGTTTGGAGTCCTTGGATGAGATAATGAATGAAATAGACGAACAGGAGCTAAATGCGATTATGTCGATGGATGGAGGAATAGAGTTTGACGCTTACAATGATGGATCATGCAACCACGCTATCCTTAAACCTTGTACACCAAAACTGAAACAACCGTCATTGGTGTTTTCCTCTCACGTTGTTGTTCTTGTCAAGCGTAACGCAATAGCACCATTGTTAACGATGGCCACCAAAGTGATGGAGGTGGTGAAAGGTCTGGACTTGAAGCGGTACATGGGTCGCTGGTATGAAATTGCTTGTTTTCCGTCGAGGTTTCAGCCCAGTGATGGCGTCAACACCAGAGCCACCTACACTCTCAGGGATGACGGCACTGTCAGAGTTCTGAACGAGACTTGGAGTGGTGGAAAAAGAAGCTTCATTGAGGGCACTGCTCATAAGGCCGATCCCAATAGTGATGAGGCCAAATTGAAGGTCAGATTTTGGGTTCCTCCTTTCTTACCCGTTATTCCTGTTACTGGGGATTACTGGGTTTTGTACATCGATCCTGATTATCAGTATGCTCTCATTGGCCAACCTAGCAGGAGTTATCTTTGGATATTGTCAAGGAAGAATCATATGGATGATGAAACCTACAAGGAGCTTGTTGAGAAAGCTAAAGATGAGGGGTATGATGTGAGCAAACTCCACAAGACTCCACACACCAATCCTCCACCAGAGGGAGAAGGTCCTGAGGACACCAAAGGTGTTTGGTGGTTCAAGTCCCTTCTGGGGAAATAG 2814 0.4268 MICVLYFSLVFELNPFTGSWFTSLPISIGLGPENKLLFKMEEEDHFPVGLRVLAVDDDRTYLTVLENLLRKCQYNVTATTEAVKALEMLRKNRNMFDLVISDVNMPEMDGFKLLQHVGLETDLPVIMLSGYGDKERVMKGVIYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTASEEINCSMSGKVANEEEPCTIAKECSQALAPKTNADQNIKGDHKRKEPCEAEEVEDDKENDEPSNQKKSRLVWDAELHNKFLAAINQLGIDKAFPKKILDLMNIEGLSRENVASHLQKFRLGLKKPNPYHRMGSVDCFRPSSESGAMLSTTLPSYAYANAPGGRFSVLNAPSSLNTRGMNSSAIVQAAQSLNINSSCIKTHGNMHSSIFSANQTSSLLQGIPTSIEANQFKPNNSPAGIRRFNLLDRSTGFKDFSSFSENRATVRNAANVSLPGFSNNHLLFQGISQLTHHSEAFRNHSSFGSAAVKAQSFDPNSCGWSKMGDDYNNKSWQGAAPISSFPSSTSAVSNVFNNDQLLQQNFKLSSSTFCSRNSPVGFSSSVPLEDDVLGEMLHQEGLHGNILLASSYTQHNKGGCSKDISQTFNSINPVISSNGGTSSLGHCYDQNNTVDNKRIDASLVGQMNGVNPSITQSSEGENFYSMKSNDAYVLQSMKSGEGLLPNSLESLDEIMNEIDEQELNAIMSMDGGIEFDAYNDGSCNHAILKPCTPKLKQPSLVFSSHVVVLVKRNAIAPLLTMATKVMEVVKGLDLKRYMGRWYEIACFPSRFQPSDGVNTRATYTLRDDGTVRVLNETWSGGKRSFIEGTAHKADPNSDEAKLKVRFWVPPFLPVIPVTGDYWVLYIDPDYQYALIGQPSRSYLWILSRKNHMDDETYKELVEKAKDEGYDVSKLHKTPHTNPPPEGEGPEDTKGVWWFKSLLGK 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01641 937 MobiDBLite consensus disorder prediction 216 231 - -
Phco8g01641 937 Gene3D - 246 304 - -
Phco8g01641 937 Gene3D - 753 916 IPR012674 -
Phco8g01641 937 SUPERFAMILY Lipocalins 759 916 IPR012674 -
Phco8g01641 937 CDD REC_typeB_ARR-like 52 166 - -
Phco8g01641 937 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 303 IPR017930 -
Phco8g01641 937 Pfam Lipocalin-like domain 765 911 IPR000566 -
Phco8g01641 937 CDD lipocalin_Blc-like 762 910 IPR047202 -
Phco8g01641 937 SMART REC_2 50 162 IPR001789 GO:0000160
Phco8g01641 937 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 300 IPR006447 GO:0003677
Phco8g01641 937 FunFam Temperature-induced lipocalin 754 916 - -
Phco8g01641 937 ProSitePatterns Lipocalin signature. 764 777 IPR022272 -
Phco8g01641 937 MobiDBLite consensus disorder prediction 905 927 - -
Phco8g01641 937 SUPERFAMILY CheY-like 49 173 IPR011006 -
Phco8g01641 937 Gene3D - 50 245 - -
Phco8g01641 937 MobiDBLite consensus disorder prediction 212 246 - -
Phco8g01641 937 SUPERFAMILY Homeodomain-like 245 304 IPR009057 -
Phco8g01641 937 PANTHER APOLIPOPROTEIN D 752 920 - -
Phco8g01641 937 FunFam Two-component response regulator 243 305 - -
Phco8g01641 937 ProSiteProfiles Response regulatory domain profile. 51 166 IPR001789 GO:0000160
Phco8g01641 937 Pfam Response regulator receiver domain 52 160 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01641 Phco-Chr8 16994001 17000682 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco8g01641 Lipocalin_2 3e-52 CL0116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01641 8 16994001 17000682 Phco8g01641 8 16994001 17000682 ECH