Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01636 ATGCCTTCTAATGTCATCGTTTTCGTCACTGTCTATCTAACCTTCATCTCTTTCAAATCTCACTCCTTTGCAGATAACCCTTCCTGGGTGAAAGCCGGTTATTACTATTCTGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACTCTTTTCACTCACCTTTTATGCGCTTTTGCCTTCATAAACCCCACCACCTACAACATCTTCATCAACTCTTCGGAGGAGCAAAAGTTCTACACCTTCACCAACACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAAGGAGGACTCTTCGGTGTTCAACTCAATGCTAAATCAATCTTCTTACCGGAAGCTTTTCATTGATTCTTCCATCAGAACAGCCAGGTTCTATGGCTTTCATGGTATAGACCTTACTGGGGCGTGGCCAAGTTCCCAGGTTACCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCTGATGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTGGTGATGGCAGGTTACTACCTTAAGGCTTCGGACTCCTTGAGTTACCCCTTCGATTCAATGCAGGAGAATTTGGATTGGGTACACTTTGTGGCTTATGATTACTATCTCCCTAAGATGGCCAATGTCACGGCTTTTCATGCGGCTCTGTATGGTTCATCTGATTGGAAAAACACTGATTCTGGCATCAGAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCACCAAACAGTGGCGTGGGAATCCCAGCTTCGGGACCAGCCGTCACAACGGATGGTTCCATGGCTTATAAGTTGATAAAGAGTTACATTAAAAGCTTTGGAAATGGAGTTGTTTCACATTACAATGCAAGTTTTGTGGTGAACCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAGGTCATCAGGGCCAAAGTTTCTTATGCAAAGGAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAAGAGGGGCAGATGAAGAAATTGAAGATCATCACAAGAAGAGGTTGCTGATAATTGTTCTGCTTGCTACTCTGACTTTGGGGCTTCTGTTGGGAATTGTATTTTGCTACTACCACAGAGGCACAGTAGCCACTGTTACCAAAATACTGTATAAACTGAGATATTTACCAGGAGCAGAAAAGGATATCGATGCAAACGGTTCTGATTTGACAGTATTCAGCTATCTCACTATTAAAGTGGCAACAAATAACTTCTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAATTACGGAAGGGTCAGGAAATAGCTGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAGTTCAAGAATGAAATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTGCTGGGTTACTGCACAAAAAGGAATGAGAAGATTCTGATCTATGAATACCTGCAAAACAAAAGCTTAGATAATTTCCTCTTCGATCCAACGAAATCAATTCTTTTAGACTGGAACAAGCGTGTGAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATTCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATGACAATATGAATCCAAAGATATCCGATTTTGGTATGGCTAGAATTTTCAGAAAGTATGACCTTGAAGCAAACACAGAAAGGATAGTTGGAACATATGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACCAAGTTCGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTATGGCATGCATGAAAATATGACCCTTCTGGAATATGCATATGGGTTGTGGAGGGAAGGAAGAGGTGTGGAGTTTGTTGACCCTTCATTGGATGATACAACATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTGTTGTGCGTTCAAGAGAACTCTGCGGATAGACCTTCCATGTTGGAAGTTGATTCAGTGCTGAAAAATGACGGTGCAGTTATTGGTACTCCCAAGATGCCTGCCTTTTCAGTTCAGAAACGTGGAGATGAGGAAGAAACATCTCACAGCGGGATCAAATTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA 2295 0.4192 MPSNVIVFVTVYLTFISFKSHSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEQKFYTFTNTVKLQNPSVSTLLSIWGGKEDSSVFNSMLNQSSYRKLFIDSSIRTARFYGFHGIDLTGAWPSSQVTNFGTLLKEWRAAITSDARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPKMANVTAFHAALYGSSDWKNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAPNSGVGIPASGPAVTTDGSMAYKLIKSYIKSFGNGVVSHYNASFVVNQFTVASTTWVNFDDVEVIRAKVSYAKENGLLGYNVFQVGNDENWELSRGADEEIEDHHKKRLLIIVLLATLTLGLLLGIVFCYYHRGTVATVTKILYKLRYLPGAEKDIDANGSDLTVFSYLTIKVATNNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKRNEKILIYEYLQNKSLDNFLFDPTKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDDNMNPKISDFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKFDVYSFGVLLLQIISGKRTSCYYGMHENMTLLEYAYGLWREGRGVEFVDPSLDDTTSPCKIMRCMQVALLCVQENSADRPSMLEVDSVLKNDGAVIGTPKMPAFSVQKRGDEEETSHSGIKFYSINDVTISQLAPR 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01636 764 CDD STKc_IRAK 452 719 - -
Phco8g01636 764 CDD GH18_plant_chitinase_class_V 27 362 - -
Phco8g01636 764 ProSiteProfiles Protein kinase domain profile. 446 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01636 764 FunFam Uncharacterized protein 421 521 - -
Phco8g01636 764 Gene3D Transferase(Phosphotransferase) domain 1 522 723 - -
Phco8g01636 764 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 372 IPR001223 GO:0005975
Phco8g01636 764 Pfam Protein tyrosine and serine/threonine kinase 448 714 IPR001245 GO:0004672|GO:0006468
Phco8g01636 764 Pfam Glycosyl hydrolases family 18 34 356 IPR001223 GO:0005975
Phco8g01636 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Phco8g01636 764 FunFam Uncharacterized protein 522 726 - -
Phco8g01636 764 Gene3D Phosphorylase Kinase; domain 1 420 521 - -
Phco8g01636 764 Gene3D Glycosidases 44 357 - -
Phco8g01636 764 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 353 761 - -
Phco8g01636 764 SUPERFAMILY Protein kinase-like (PK-like) 430 735 IPR011009 -
Phco8g01636 764 Gene3D - 257 327 IPR029070 -
Phco8g01636 764 SMART serkin_6 446 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01636 764 SMART 2g34 29 356 IPR011583 GO:0008061
Phco8g01636 764 SUPERFAMILY (Trans)glycosidases 32 359 IPR017853 -
Phco8g01636 764 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01636 Phco-Chr8 16938349 16941651 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco8g01636 Glyco_hydro_18 2.8e-54 CL0058