Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01612 ATGAAAGTTGTGAGCATGGAGACAGAGAAGAAGTGTGGTTGCTGGTCTGTCCTTAAACGCGGTGTTAGAGGTGCGTGCAAACCTACAGCTTCCGGAGACTCTGCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCCTTGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCCCAGGAGACCAAGGCTGCATGCCAGCTTCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCCCTCCCGTGGTCCAACAGAGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATTTTGCTTGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACTGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCAAGTGGGGAACAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGCCTCGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTTACTCCATTGCAGGAGCTTAATGACCTTGCAATTTTGTCTTATCACACTCGCTTGTCTCAACAAGGGAGACGGAAGAAGAAAGATGGAACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCCTTGAATACCAGCAAGCAGCATCGATGA 1305 0.449 MKVVSMETEKKCGCWSVLKRGVRGACKPTASGDSANTIPRTSLVYDAATETRYLNASNRELCPPLEARLSSDNPDPPPQETKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQELNDLAILSYHTRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01612 434 Pfam Protein tyrosine and serine/threonine kinase 106 381 IPR001245 GO:0004672|GO:0006468
Phco8g01612 434 CDD STKc_IRAK 108 384 - -
Phco8g01612 434 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Phco8g01612 434 MobiDBLite consensus disorder prediction 414 434 - -
Phco8g01612 434 Gene3D Phosphorylase Kinase; domain 1 78 187 - -
Phco8g01612 434 SUPERFAMILY Protein kinase-like (PK-like) 86 387 IPR011009 -
Phco8g01612 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Phco8g01612 434 FunFam Serine/threonine-protein kinase BIK1 70 187 - -
Phco8g01612 434 Gene3D Transferase(Phosphotransferase) domain 1 188 399 - -
Phco8g01612 434 PANTHER OS01G0588500 PROTEIN-RELATED 80 385 - -
Phco8g01612 434 FunFam Probable serine/threonine-protein kinase PBL8 188 401 - -
Phco8g01612 434 ProSiteProfiles Protein kinase domain profile. 102 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01612 434 MobiDBLite consensus disorder prediction 398 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01612 Phco-Chr8 16599502 16603051 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g01612 PK_Tyr_Ser-Thr 2.9e-49 CL0016