Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01594 ATGACAAGCTGCGGCATCGATGTTGCGCCTGAGCAGCTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCTGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTAATGTATCTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCCCATATTCACTTTGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAGCATTTATTGTCAAGGGCTGCGCTAATGAATAAATGA 561 0.4777 MTSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTNVSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLLSRAALMNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01594 186 CDD HMG-box_SF 113 149 - -
Phco8g01594 186 PANTHER PROTEIN YABBY 6-RELATED 9 169 IPR006780 GO:0007275
Phco8g01594 186 FunFam Axial regulator YABBY 104 176 - -
Phco8g01594 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Phco8g01594 186 Gene3D High mobility group box domain 97 176 IPR036910 -
Phco8g01594 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01594 Phco-Chr8 16334742 16338093 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco8g01594 YABBY 2.4e-69 CL0114