Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01579 ATGGACATCACTGCTGTGATTATAACCTGCCTGTTGCTCCTGTCTTTGGGCACAAGAGTTGAAACGCGGCAGATAGCACTCGGTGCCACACTTGAACCACAGAGTACTACTACTCCTGCTTTCTGGCTTTCTCCTTCTGCTCAATTTGCATTTGGTTTTTATCCACAAGAACAAGGTGGTGGTTTTGTCGTTGCAATTTGGCTGGTTAGCAGGGAGAACAAGACGGTTGTATGGACTGCGCAACGGAACGATCCTCCGGTAACCTCTGGTGCAAAGCTACAACTAAATATGGATGGTAAACTCGTACTAACAGACGAGCAAGGAAAAGAGAAGGTTATTGCGGATAATTCCAGTGCAAAAGCTGTCTCTGCCTCCGTGCTTGATTCTGGAAACTTTGTGCTCTACAACAATAATAACAACATCATATGGCAGAGTTTCGATTACCCAACAGATACTTTGTTAGGTGGTCAATCTCTTCCAAATGGACATCAACTGGTGTGCAATTCATCAGAGAACAACCACTCAAGTGGACGGTTTCGTCTCAAGATGCAGGATGACGGAAATCTTGTTCTGTATCCAGTGGACACAACAGACACAGCAACGGATGCTTACTGGGCCGCTAATAATAATAATCCTTTTACTCGTAATCTTGGTAACGGAACTCAGCAGTATATCCTGCGGATTCTGAATGAAAGCAGTGATGGGAGAACTATGAAGATTCTAAGTGTAGTCAGTAATTCATCTTTGGATAATGATGGAAACCGGATCATCTATCGTGCAACCCTGAACTATGATGGGTTATTTCATCTGTATGCTCATTTTAACAATGGTAGTATCCAAAATTTGGCACATTGGCCGCAGGTTAATAACATGTGTTTTGTAAAAGGCTTTTGTGGCTTCAACAGCTACTGCACACACGTTGATGCTGAACCAGTATGCTCTTGTCTTTCGGGTTTTATCTCCATACATCCAAACGACTCCACTCTGGGCTGCAAAAGGAGCTTTCTGAAGGAAGATTGTAGGGGGAAGAAAGACAGCGCAACCTCGTATGAGATGAAGTCGAAGGAGAATATTGCATTGGTGGATGTTCCTTATTTAAAGGATGAAATGTCACAAGAAGAGTGCTCCGCAACTTGCTTGAATGATTGCAATTGTGAGGCTGCATTTTACGACGGTAAAAACTGCATGAAACAGAGGCTGCCTTTGAGATATCTCAGACGGACATTAGAAAAAGATGGTAGCATAGAGCTACCGTGGGAAGTGGGAGTGCTATTGTGGAAAGTGGGAGACAGCCTCAGCAATCAGACAGGGAACGATAATCCTGTGCCTGAACAACTAGCAATCAAAGTAACAAGTAATAAAGCAACGGTGCATATTATTATCATTACATCCATTTTTTCTCTGCTTATATGTTCAACCATTGTCATCTCCAGCCACTACATGTACAAGATTCGGCTTTTGAAATATAAAAGATTGATGGAAACTGGGAACTTGGGCCTGAATGAAGAGGTGACTTTGAGAAGGTTTTCATACAGCGAACTCAAAAGAGCCACAAATAATTTCAAGATAGAACTGGGAAAAGGGTCTTTCGGAGCAGTTTACAAGGGGGCGTTGGAGAAAGGTAAGAGGTTGATTGCTGTGAAGAGACTGGAGAAGTTAGTGGAAGAAGGAGAAAGCGAGTTCCAAGCAGAAATGAGAGCCATTGGAAAAACCCGTCACAGGAATCTAGTTCGTTTGTTGGGTTTCTGTGCGGAGGGTTCTAAAAGGCTTCTGGTGTATGAATACATGTCCAATGGTTCACTTGGAAACCTTATCTTTGTGGGTCAAAGTCAGAGACGTCCAGAGTGGGATGAGAGAGTAAGAATAGCGGTGGAGATTGCGAGAGGGATAATGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAGAACATCTTGGTGGATGAGTTCTGGACTGCCAAACTATCCGATTTTGGGCTGGCCAAACTTCTCATGCCCGATCAAACCAGAACCATGACAAGGGCTAGAGGGACAAGAGGGTACGTGGCCCCTGAATGGAACAAGAATGTCCCCATATCTGTCAAGACTGATGTTTATAGCTACGGAATAATGCTGTTGGAAATTCTATGTTGCAGAAGAAACTTCGAAGTTCATGTCTCTGAACCTGAGGCTGTTGTTCTCTCCACCTGGGCTTATTACTGTTTTGTTGCAGGAAAACTCAATAAGCTTTTTCCTTGGGAAGTCGTGGATGACAAAACTGCCGTGGAAAATATGCTTAAAGTGGCACTTTGGTGTATCCAAGATGAACCTTTTCTTCGCCCAACAATGAAGAGTGTCGTATTGATGTTAGAAGGGGTCACGGACATAGCAATTCCTCCTTGTCCCGCTTCCAATTCTGCTTGA 2421 0.4358 MDITAVIITCLLLLSLGTRVETRQIALGATLEPQSTTTPAFWLSPSAQFAFGFYPQEQGGGFVVAIWLVSRENKTVVWTAQRNDPPVTSGAKLQLNMDGKLVLTDEQGKEKVIADNSSAKAVSASVLDSGNFVLYNNNNNIIWQSFDYPTDTLLGGQSLPNGHQLVCNSSENNHSSGRFRLKMQDDGNLVLYPVDTTDTATDAYWAANNNNPFTRNLGNGTQQYILRILNESSDGRTMKILSVVSNSSLDNDGNRIIYRATLNYDGLFHLYAHFNNGSIQNLAHWPQVNNMCFVKGFCGFNSYCTHVDAEPVCSCLSGFISIHPNDSTLGCKRSFLKEDCRGKKDSATSYEMKSKENIALVDVPYLKDEMSQEECSATCLNDCNCEAAFYDGKNCMKQRLPLRYLRRTLEKDGSIELPWEVGVLLWKVGDSLSNQTGNDNPVPEQLAIKVTSNKATVHIIIITSIFSLLICSTIVISSHYMYKIRLLKYKRLMETGNLGLNEEVTLRRFSYSELKRATNNFKIELGKGSFGAVYKGALEKGKRLIAVKRLEKLVEEGESEFQAEMRAIGKTRHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGNLIFVGQSQRRPEWDERVRIAVEIARGIMYLHEECEAPIIHCDIKPQNILVDEFWTAKLSDFGLAKLLMPDQTRTMTRARGTRGYVAPEWNKNVPISVKTDVYSYGIMLLEILCCRRNFEVHVSEPEAVVLSTWAYYCFVAGKLNKLFPWEVVDDKTAVENMLKVALWCIQDEPFLRPTMKSVVLMLEGVTDIAIPPCPASNSA 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01579 806 FunFam Serine/threonine-protein kinase 149 281 - -
Phco8g01579 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 210 IPR036426 -
Phco8g01579 806 ProSitePatterns Protein kinases ATP-binding region signature. 525 548 IPR017441 GO:0005524
Phco8g01579 806 ProSiteProfiles Protein kinase domain profile. 519 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01579 806 CDD B_lectin 43 149 IPR001480 -
Phco8g01579 806 SMART blect_4 33 149 IPR001480 -
Phco8g01579 806 Pfam S-locus glycoprotein domain 252 320 IPR000858 GO:0048544
Phco8g01579 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Phco8g01579 806 SUPERFAMILY Protein kinase-like (PK-like) 503 790 IPR011009 -
Phco8g01579 806 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Phco8g01579 806 Gene3D - 147 247 IPR036426 -
Phco8g01579 806 CDD STKc_IRAK 525 791 - -
Phco8g01579 806 Gene3D Transferase(Phosphotransferase) domain 1 596 796 - -
Phco8g01579 806 Pfam Protein kinase domain 524 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01579 806 SMART serkin_6 519 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01579 806 Gene3D Phosphorylase Kinase; domain 1 486 595 - -
Phco8g01579 806 ProSiteProfiles Bulb-type lectin domain profile. 150 283 IPR001480 -
Phco8g01579 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 19 147 - -
Phco8g01579 806 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 801 - -
Phco8g01579 806 Pfam D-mannose binding lectin 75 159 IPR001480 -
Phco8g01579 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Phco8g01579 806 Gene3D - 25 146 IPR036426 -
Phco8g01579 806 FunFam S-receptor-like serine/threonine-protein kinase 489 595 - -
Phco8g01579 806 Coils Coil 547 567 - -
Phco8g01579 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01579 Phco-Chr8 16175073 16177493 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco8g01579 Pkinase 2.3e-49 CL0016