Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01568 ATGACCTTCCATGCATCTTATACCTGCCTTGCAAAGGTAATTCCAGCTACGTTGGTGCTTTTGCTGGCTATGTCTGAAGGCACTTCAGGACTCACACAAGTTGATGCCCTTCTTAGATGGAAACAAAGTCTACCTGACCAACCCATTCTGGATTCTTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCAAGGTAGCGTCACTATAATAAACTTGGCTTATACTGGACTTGCAGGTACCCTTCAAAATTTGAACTTCTCTGTTTTTCCAAACCTTCTTCGTCTTGACCTCAAAGTAAACAACCTCACTGGCTCCATACCACAAAACATTGGGGTGCTCTCAAACCTCCAGTTCCTTGACCTTTCCACCAACTATCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTTTCAAGAAATGATATATCAGGGGTATTAGACCCTGCCCTATTTCCTGATGGGTCTCACACCCCCAAAATTGGCCTCATTGGTATCAGGAACCTCCTCTTCCAGGACACCTTGCTAGGTGGCAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCCATGGTCCTATTCCCCCATCTCTAGGCAACTGCACTCATTTAAGCATTCTTAGAATGCCTCAAAACCAACTCTCAGGCTCAATACCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCCTTTTCACCAACAACTTAAATGGTACTGTTCCCCAAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTCGTTGGTGAATTACCACCACAGGTGTGCAAAAGTGGAAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCAATTCCAAGAAGCCTTAGAGACTGTCCTTCCTTGTACAGGGTTCGACTTGAATACAACAGGCTGACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGCCATAACAGGGTGGAAGGTGACCTCACTGCAAATTGGGGTGCCTGCCAAAACTTGCAATATCTCAGCATGGCTGGGAATGGAGTAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTTGATCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAACTCAACCTTGTATGAATTAAATTTGAGTGAAAACAAACTCTCTGGCATGGTACCAGAAGAAATTGGAAAGCTTTCCAATTTGCGATCCTTAGACCTCTCTATGAACATGCTACTGGGACCAATCCCCAGTCAGATAGGAGAGATCTCCAACTTGCAGAATTTAAATCTTAGCAACAATAATTTTAATGGCTCAATCCCCTATCAAGTTGGAAATCTTGCATCTTTGCAAGATTTTTTGGACTTAAGTTACAATGAACTTTCAGGAGAAATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGTCAGGTCCAATCCCTGACTCCCTTAGTAAAATGGTGAGTTTGTCAGCAATCAACCTATCGAACAACAATTTGGAGGGTCCAGTTCCTGAAGGTGGTATATTCAACTCTTCTCATCCCGTGGATTTGAGCAACAACAAAAATTTATGTGGGAATATTCAAGGTTTGCAACCTTGTAATGTCTCTCTGACTAAACCTGATGGTGGTGGATCAAGTAACAAAAACAAGGTTGTGATCCCAATAGTTGCATCCTTGGGAGGTGCTCTTATTATTTCTCTGGTGTGTGTTGGGATTGTTTTTTTTTGCTACAAGAGAAAATCAAGAGCTCGAAGACAAAAAAGTTCAATCAAAAAACTAAATCCATTTTCCATTTGGTACTTCAATGGCAGAGTTGTGTACGGAGACATAATTGAAGCTACCAAGAACTTTGACCCCCAGTATTGCATTGGGGAAGGAGCACTGGGAAAAGTCTATAAAGCAGAGATGAAAGGTCAAGTATATGCCGTAAAAAAGTTGAAGTGTGATGCAGAAAACTTAGACATTGAGAGTATAAAAACCTTTCAGAATGAGGTAGAAGCGATGTCAGAAACACGCCATCGAAACATTGTCAAGCTTTATGGATTTTGCTCTGAAGGGATGCATACATTTTTAATTTATGAGTATATGAATAGAGGGAACTTGGCTGACATGCTGAGAGATGAAAAGGATGCATTAGAACTAGATTGGCCCAAGAGGGTTGACATTGTGAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTGCTCCACCTTTGATTCACAGAGACATATCAAGCAAGAACATTTTACTCTCCTCTAATCTTTCAGCTCACGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGTCGGATTCACCTATTTGGACAGCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGAGTTTTGGCTTTCGAGGTTCTTACGGGGAAGCACCCGGGTGAGCTTGTTTCCTACATACAAACTTCCAGTGAACAGAAAACAATCTTCAAAGAGATTTTAGACCCTCGTCTCTTGCCTCCTTCTAAGAACAATATTTTGAAGGATTTGGCATTGATTGCCAACCTTGCTCTTTCATGTTTACAAACCAATGCTCAATCTCGACCAACAATGCGATACATAGCTCAATTCCTTGAAATGGATACGTGTTGA 2835 0.4176 MTFHASYTCLAKVIPATLVLLLAMSEGTSGLTQVDALLRWKQSLPDQPILDSWVINSTATTQTPCSWRGITCDSQGSVTIINLAYTGLAGTLQNLNFSVFPNLLRLDLKVNNLTGSIPQNIGVLSNLQFLDLSTNYLNGTLPLSIANLTQVFELDVSRNDISGVLDPALFPDGSHTPKIGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNNFHGPIPPSLGNCTHLSILRMPQNQLSGSIPPSIGKLTNLTDVRLFTNNLNGTVPQEFGNLSSLIVLHLAENNFVGELPPQVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSHNRVEGDLTANWGACQNLQYLSMAGNGVSGNIPSEIFQLDQLQELDLSSNQISGEIPPQIGNSTLYELNLSENKLSGMVPEEIGKLSNLRSLDLSMNMLLGPIPSQIGEISNLQNLNLSNNNFNGSIPYQVGNLASLQDFLDLSYNELSGEIPSDLGKLSNLVSLNISHNNLSGPIPDSLSKMVSLSAINLSNNNLEGPVPEGGIFNSSHPVDLSNNKNLCGNIQGLQPCNVSLTKPDGGGSSNKNKVVIPIVASLGGALIISLVCVGIVFFCYKRKSRARRQKSSIKKLNPFSIWYFNGRVVYGDIIEATKNFDPQYCIGEGALGKVYKAEMKGQVYAVKKLKCDAENLDIESIKTFQNEVEAMSETRHRNIVKLYGFCSEGMHTFLIYEYMNRGNLADMLRDEKDALELDWPKRVDIVKGVASALSYMHHDCAPPLIHRDISSKNILLSSNLSAHVSDFGTARFLKSDSPIWTAFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEVLTGKHPGELVSYIQTSSEQKTIFKEILDPRLLPPSKNNILKDLALIANLALSCLQTNAQSRPTMRYIAQFLEMDTC 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01568 944 SMART LRR_typ_2 277 301 IPR003591 -
Phco8g01568 944 SMART LRR_typ_2 124 148 IPR003591 -
Phco8g01568 944 SMART LRR_typ_2 517 541 IPR003591 -
Phco8g01568 944 SMART LRR_typ_2 397 421 IPR003591 -
Phco8g01568 944 SMART LRR_typ_2 444 468 IPR003591 -
Phco8g01568 944 Pfam Leucine Rich Repeat 519 540 IPR001611 GO:0005515
Phco8g01568 944 Gene3D Ribonuclease Inhibitor 179 286 IPR032675 -
Phco8g01568 944 ProSiteProfiles Leucine-rich repeat profile. 399 421 IPR001611 GO:0005515
Phco8g01568 944 FunFam Leucine-rich repeat receptor protein kinase MSP1 634 750 - -
Phco8g01568 944 Gene3D Transferase(Phosphotransferase) domain 1 751 943 - -
Phco8g01568 944 SUPERFAMILY L domain-like 58 435 - -
Phco8g01568 944 SMART serkin_6 672 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01568 944 Pfam Protein kinase domain 677 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01568 944 FunFam MDIS1-interacting receptor like kinase 2 751 944 - -
Phco8g01568 944 FunFam Leucine-rich repeat receptor-like protein kinase TDR 274 590 - -
Phco8g01568 944 FunFam Nuclear pore complex protein NUP107 31 171 - -
Phco8g01568 944 PANTHER LEUCINE RICH REPEAT KINASE 2 226 941 - -
Phco8g01568 944 PRINTS Leucine-rich repeat signature 400 413 - -
Phco8g01568 944 PRINTS Leucine-rich repeat signature 444 457 - -
Phco8g01568 944 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Phco8g01568 944 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Phco8g01568 944 Pfam Leucine rich repeat 399 457 IPR001611 GO:0005515
Phco8g01568 944 Gene3D Ribonuclease Inhibitor 32 178 IPR032675 -
Phco8g01568 944 ProSiteProfiles Protein kinase domain profile. 672 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01568 944 SUPERFAMILY L domain-like 349 585 - -
Phco8g01568 944 SUPERFAMILY Protein kinase-like (PK-like) 646 940 IPR011009 -
Phco8g01568 944 Gene3D Phosphorylase Kinase; domain 1 632 750 - -
Phco8g01568 944 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 269 - -
Phco8g01568 944 Gene3D Ribonuclease Inhibitor 287 591 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01568 Phco-Chr8 16113660 16116638 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco8g01568 Pkinase 3.5e-47 CL0016