LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g01555	ATGGACGAAGATTCCCTCAAACGCAATACCGATTGTGTTTATTTCTTAGCGTCTCCCCTCACTTGCAAGAAGGGGGCAGAATGTGAGTATCGCCACAATGAGATTGCCAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCGAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCACCATCTGAACCTACACAAAATTCATTGCCTGCAAACAAGACAATGGTACCGTGTTTTTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGGAAAACCTGTGAAGAATGATAACGGAAGCACCGATGCACACAATCTAGAAAATAAATCATCATCAGGAAATGGAACTGGTGTAGCGTCAGTACCAACTCACCAATCTTTAACTGCTCCAAAGCATTGGTCTGATTTTAAGCTTCAGCCCAAGGAAGATCATCAGTTACAGTTAACCAAAAATGTCAAGCAGCAAGGCGATTCCTTAGTGATATCTGCTCCTGAATATAAAGCAGCTGCAGTGTGTAGGTCGGACTCTCCGTTTCCAGATGATGGCTTTGTTCATAATATATCTCATTTACGCACTGAGCAGGGTTCGGAGGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACGATGAATTGGAGAACGTCGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAACAGTACCTGGGGCATGAATTTAAAGATCTAATTGACTATGATACTATGTGCCCAGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGAGACCCTGCTCATGGTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGAAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCTTATGACAGTAATTTAGATCTACGTGACCATCTGAGGAGACGTAGAGAAAATAATGGGCCTCCCGTTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTAATGATTCGAAACCCGGAAAGGCATCAGAGGCCTGGCATTGAGCAGCGGCCAAGTAGAAGATTGACATCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACATAGACCACGGAAGCATTATAGAGAAAAACCAGTCAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTCTAAACAAAGGGGATTTATTCAAGAATCCACTACATTTTCAGGACCTAAGTCTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGGCCGAGGAAGGTTTACATTGGAAAAACACATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATTAG	1566	0.4246	MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGECLNPTCAFRHPPLDGHTGVPAPSEPTQNSLPANKTMVPCFFFFNGFCNKGDKCSFLHGSDDSIFTGKPVKNDNGSTDAHNLENKSSSGNGTGVASVPTHQSLTAPKHWSDFKLQPKEDHQLQLTKNVKQQGDSLVISAPEYKAAAVCRSDSPFPDDGFVHNISHLRTEQGSEEQVNSQIEPEERWESSPHSPGFDVLVHDELENVGYEEDSEYLPVLDRNEQELNEQYLGHEFKDLIDYDTMCPEADILYPQETYDGYRCFDRDPAHGNGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDSNLDLRDHLRRRRENNGPPVAGFLRRQESSSLMIRNPERHQRPGIEQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHRPRKHYREKPVKRPFLSSKISRKPVSKQRGFIQESTTFSGPKSLAEIKEEKKKAEEGLHWKNTSTDFQDPKPLSEILKDKRTMD	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	486	521	-	-
	Phco8g01555	521	FunFam	Zinc finger CCCH domain-containing protein 17	1	63	-	-
	Phco8g01555	521	ProSiteProfiles	Zinc finger C3H1-type profile.	83	110	IPR000571	GO:0046872
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	118	147	-	-
	Phco8g01555	521	Pfam	RNA-binding, Nab2-type zinc finger	88	108	-	-
	Phco8g01555	521	SUPERFAMILY	CCCH zinc finger	83	108	IPR036855	GO:0046872
	Phco8g01555	521	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Phco8g01555	521	Gene3D	-	74	141	-	-
	Phco8g01555	521	Gene3D	-	2	63	-	-
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	462	479	-	-
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	432	447	-	-
	Phco8g01555	521	ProSiteProfiles	Zinc finger C3H1-type profile.	6	35	IPR000571	GO:0046872
	Phco8g01555	521	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	432	452	-	-
	Phco8g01555	521	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	520	-	-
	Phco8g01555	521	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Phco8g01555	521	SMART	c3hfinal6	83	109	IPR000571	GO:0046872
	Phco8g01555	521	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Phco8g01555	521	MobiDBLite	consensus disorder prediction	462	481	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g01555	Phco-Chr8	15995626	15997855	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Phco8g01555		zf-CCCH_3	2.4e-11	CL0537

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g01555	8	15995626	15997855	Phco8g01555	8	15995626	15997855	ECH