Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01555 ATGGACGAAGATTCCCTCAAACGCAATACCGATTGTGTTTATTTCTTAGCGTCTCCCCTCACTTGCAAGAAGGGGGCAGAATGTGAGTATCGCCACAATGAGATTGCCAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCGAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCACCATCTGAACCTACACAAAATTCATTGCCTGCAAACAAGACAATGGTACCGTGTTTTTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGGAAAACCTGTGAAGAATGATAACGGAAGCACCGATGCACACAATCTAGAAAATAAATCATCATCAGGAAATGGAACTGGTGTAGCGTCAGTACCAACTCACCAATCTTTAACTGCTCCAAAGCATTGGTCTGATTTTAAGCTTCAGCCCAAGGAAGATCATCAGTTACAGTTAACCAAAAATGTCAAGCAGCAAGGCGATTCCTTAGTGATATCTGCTCCTGAATATAAAGCAGCTGCAGTGTGTAGGTCGGACTCTCCGTTTCCAGATGATGGCTTTGTTCATAATATATCTCATTTACGCACTGAGCAGGGTTCGGAGGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACGATGAATTGGAGAACGTCGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAACAGTACCTGGGGCATGAATTTAAAGATCTAATTGACTATGATACTATGTGCCCAGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGAGACCCTGCTCATGGTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGAAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCTTATGACAGTAATTTAGATCTACGTGACCATCTGAGGAGACGTAGAGAAAATAATGGGCCTCCCGTTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTAATGATTCGAAACCCGGAAAGGCATCAGAGGCCTGGCATTGAGCAGCGGCCAAGTAGAAGATTGACATCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACATAGACCACGGAAGCATTATAGAGAAAAACCAGTCAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTCTAAACAAAGGGGATTTATTCAAGAATCCACTACATTTTCAGGACCTAAGTCTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGGCCGAGGAAGGTTTACATTGGAAAAACACATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATTAG 1566 0.4246 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGECLNPTCAFRHPPLDGHTGVPAPSEPTQNSLPANKTMVPCFFFFNGFCNKGDKCSFLHGSDDSIFTGKPVKNDNGSTDAHNLENKSSSGNGTGVASVPTHQSLTAPKHWSDFKLQPKEDHQLQLTKNVKQQGDSLVISAPEYKAAAVCRSDSPFPDDGFVHNISHLRTEQGSEEQVNSQIEPEERWESSPHSPGFDVLVHDELENVGYEEDSEYLPVLDRNEQELNEQYLGHEFKDLIDYDTMCPEADILYPQETYDGYRCFDRDPAHGNGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDSNLDLRDHLRRRRENNGPPVAGFLRRQESSSLMIRNPERHQRPGIEQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHRPRKHYREKPVKRPFLSSKISRKPVSKQRGFIQESTTFSGPKSLAEIKEEKKKAEEGLHWKNTSTDFQDPKPLSEILKDKRTMD 521
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01555 521 MobiDBLite consensus disorder prediction 486 521 - -
Phco8g01555 521 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Phco8g01555 521 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Phco8g01555 521 MobiDBLite consensus disorder prediction 118 147 - -
Phco8g01555 521 Pfam RNA-binding, Nab2-type zinc finger 88 108 - -
Phco8g01555 521 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Phco8g01555 521 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Phco8g01555 521 Gene3D - 74 141 - -
Phco8g01555 521 Gene3D - 2 63 - -
Phco8g01555 521 MobiDBLite consensus disorder prediction 462 479 - -
Phco8g01555 521 MobiDBLite consensus disorder prediction 432 447 - -
Phco8g01555 521 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Phco8g01555 521 Pfam Zinc-finger containing family 7 63 IPR041686 -
Phco8g01555 521 MobiDBLite consensus disorder prediction 432 452 - -
Phco8g01555 521 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 520 - -
Phco8g01555 521 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Phco8g01555 521 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Phco8g01555 521 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Phco8g01555 521 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco8g01555 Phco-Chr8 15995626 15997855 Dispersed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g01555 zf-CCCH_3 2.4e-11 CL0537
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01555 8 15995626 15997855 Phco8g01555 8 15995626 15997855 ECH