Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01551 ATGAGTTTCTCTGACCACATTCCATCGTTTATGATGTCACCACCGTCGTTTTCTACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAACGAATTGTTGGAGCCACATTCACCACAGGATCAACCCCCTTCGTTTAAGAGGGCAAGGATTGGTGATAACAACCACTCGTATGCAATGGGATGCCCTCCAAGGGTGACTCAGAATCCTGGTTTTAACAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAGTTCAGAATTGGGGCTTGTAGGAACGGTGAGAATTGCAATTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCTCCGAACTGGCAAGAGCTTGTTGGATTGCGCAATGAGGAGCGGCTGCCGTCGGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGTCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCTAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAGCATCGGAACTAATGGATCTCCCAAGGCATATGGTGATCCTTCTAGTTATTTAGAGAGTAATAGGGTTGTAAACACTGGCTTGAATGTTTCCCGGCCGAATGTTAAGTCCACTTATTGGAAGACTAAACTGTGCATCAAATTTGAGACAACAGGCCACTGTCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCTGGTGCCATTCCAATTTCAACTAAAGCTATCATTCCAACTTTACCAAGAGCTACACCAGTTTCTTCTAATGATGCACCTCCTAGCCACAGAGCAAGTGTACCTCCTGCAAATGAAGAGGAGCAGGGCAAGAAGTATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGATGATTTGCCACTTGTTCACAACTTACCAGGCAGAGTTCATCAATTGTCAAAATTTCTGGACCTAACCCAGCTTTCTCGCAAAAGCAAGGCTTCTCCCGCCACCATGTCCATAAACGTTCATTCCCATGCCTTCGCCGGCCACCCTCTTCTCTCCAAATTCTCACTTTCAGGCCACCCCCTTCCACCCTCTTCAGCTCTTGAAGCCCTCAACGTGCGAATTGGTCAACCAAATACTCATTCGTATCCCTCCCTGAGCTTCAAGGTACTGCCTTTCAGAAATGGGAGGCCCTTGGCTTCTTCCGAGACCAGCTCCGGCGACTCGCCGCCGATTTGGCATCTGGGTTGGCTCGGCTTGGACGATCTCAGGGTTATTTACGACAATTCCGGTGCGCAGTTCAGTGTGGACTCGTTGGTGTATCTGAATTCGAGTGCAGAGAACGACGCCGTTTACTGGGCAATCGATGTTTCTGCTGAGGTAATTGAATTGGGTAGCAAAACGGGTTTGCGTTTTGTGGAGCTTCGAACTCTCATGGTGGCTACCGACTGGTCGGATTTGCAAGCAATGGGAAACTTAGCTATTGCTGGTCATGCTAAGGCACTGCTAGAATGGCATAATATTTCACGATTTTGTGGACATTGTGGTGAGAAAACAGTCCCTATGGAAGCTGGGAGACGGAAGCAATGTTCAAATGGTTCATGCAAAAAAAAGATATACCCACGTGTTGATCCGGTGGTCATTATGCTTGTAATTGATAGAGAGAATGACCGTGCTCTTTTGGCTAAACGACCAATGCGTCTACATCGATTGTATACTTGTTTATCAGGTTTCACAGAGCCAGGAGAAAGCTTGGAGGAAGCTGTGAGAAGAGAAACATGGGAAGAGACTCGTGTTAAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCGTGGCCTGTTGGACCAAGTGGCATTCCATGCCAGTTGATGGTTGGGTTCTTTGCATATGCAGAATCCCTTGAAATAACTGTGGACAAGAAAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGATGTGAGAAAAGCATTGACGTTTGCTAAATACAAGGAAACCCAAAGAACTGCAGCAGAAAAGGTCGAGCAAATATGCAAGGGACTAGAAGAGAACAGAAGCTTGGCTTCAGATTTCAACGTGGAAAGTGCTGGTGAAAATGCTCCAATAGTTTTCCCTGGACCTTTTGCAATAGCCCATCACCTTATTTCTTCTTGGGCCTTCTCTGATAAAAATATAGTGCATCATTCAAAATAA 2283 0.4608 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNELLEPHSPQDQPPSFKRARIGDNNHSYAMGCPPRVTQNPGFNKGTSHIFFKTRMCAKFRIGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRYRESTAISIGTNGSPKAYGDPSSYLESNRVVNTGLNVSRPNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAIPISTKAIIPTLPRATPVSSNDAPPSHRASVPPANEEEQGKKYLLKWKGPKKINRIYGDWLDDLPLVHNLPGRVHQLSKFLDLTQLSRKSKASPATMSINVHSHAFAGHPLLSKFSLSGHPLPPSSALEALNVRIGQPNTHSYPSLSFKVLPFRNGRPLASSETSSGDSPPIWHLGWLGLDDLRVIYDNSGAQFSVDSLVYLNSSAENDAVYWAIDVSAEVIELGSKTGLRFVELRTLMVATDWSDLQAMGNLAIAGHAKALLEWHNISRFCGHCGEKTVPMEAGRRKQCSNGSCKKKIYPRVDPVVIMLVIDRENDRALLAKRPMRLHRLYTCLSGFTEPGESLEEAVRRETWEETRVKVGEVVYHSSQPWPVGPSGIPCQLMVGFFAYAESLEITVDKKELEDAQWYSREDVRKALTFAKYKETQRTAAEKVEQICKGLEENRSLASDFNVESAGENAPIVFPGPFAIAHHLISSWAFSDKNIVHHSK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01551 760 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Phco8g01551 760 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Phco8g01551 760 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Phco8g01551 760 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Phco8g01551 760 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Phco8g01551 760 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Phco8g01551 760 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Phco8g01551 760 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Phco8g01551 760 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Phco8g01551 760 MobiDBLite consensus disorder prediction 284 307 - -
Phco8g01551 760 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Phco8g01551 760 Gene3D - 450 571 - -
Phco8g01551 760 ProSiteProfiles Nudix hydrolase domain profile. 571 701 IPR000086 -
Phco8g01551 760 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Phco8g01551 760 Coils Coil 694 714 - -
Phco8g01551 760 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Phco8g01551 760 Pfam NUDIX domain 576 693 IPR000086 -
Phco8g01551 760 Pfam NADH pyrophosphatase zinc ribbon domain 539 566 IPR015376 GO:0016787|GO:0046872
Phco8g01551 760 CDD NADH_pyrophosphatase 575 749 - -
Phco8g01551 760 ProSitePatterns Nudix box signature. 607 628 IPR020084 GO:0016787
Phco8g01551 760 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 386 753 - -
Phco8g01551 760 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 420 535 IPR015375 GO:0016787
Phco8g01551 760 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 572 712 - -
Phco8g01551 760 SUPERFAMILY Nudix 523 694 IPR015797 -
Phco8g01551 760 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Phco8g01551 760 Gene3D - 77 114 - -
Phco8g01551 760 Gene3D - 220 258 - -
Phco8g01551 760 Gene3D - 143 172 - -
Phco8g01551 760 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Phco8g01551 760 FunFam Nudix hydrolase 19, chloroplastic 572 752 - -
Phco8g01551 760 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01551 Phco-Chr8 15963305 15972969 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g01551 NUDIX 9.3e-14 CL0261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01551 8 15963305 15972969 Phco8g01551 8 15963305 15972969 ECH
Phco8g01551 8 15963305 15972969 Phco7g02358 7 41285776 41291438 PCT