Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01545 ATGAATGCTCCTACCACTGTAACCGCCATCACCACCACTCCTCCCAGTAGGGATGAACCCGACTATGACAGCAGCTCCTCCTCCATCACGGTGCCGGAATCCAGCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGTCGGCGCCGCCGGAGCTCGGTCTCTCTGTGCTCCTCCACCCTGGAGAGCCCGCACGCGAGGCCCCACAAGGCGAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGGCGGGACAAGGGGCAGGTGGGTCTGGAGCACTTCCGCCTGCTGCGGCGGCTGGGAAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCTGTGGTGGGGTTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACCGAGAGGCACTTGCGATAAGGAAGAAGCTGCAGAGGGCGGAGATGGAGAAGGAGATTCTTGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGAGGTGACTTGTACGCTGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCCATTACATCCACTAAGTTTTATGCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTTGTGAGGGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCGCTCAAATGTGACGTTGTTCCCAAGCTGTTAAGGAGTAAGACGAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCTGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAAAAGAAAGCGAGTGTGACAACAGTTATAAGGGAAAATGTTGAGGTGGAAGAGCTTGATCCGGAGCTGGTGGCTGAGCCTATTGATGCCAAATCCAAGTCATTTGTCGGGACACATGAGTACTTGGCACCAGAAGTGATATTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTCTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAGAAAACTCTCGTCAACATTTTGAAGCAACCATTGGCTTTCCCTAGAATTGCAGTTAGCAGCAGCAAGGATTATGAAGAGATGGTGAAAGTTCAGGACCTTATAAGCAAGCTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCCTTAATTAGATCAGTTACGCCACCTGAAGTCCCTAATGATATGAACAAAATTAGGAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA 1455 0.5045 MNAPTTVTAITTTPPSRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSLCSSTLESPHARPHKANQAAWEVMRRLRRDKGQVGLEHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSTKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKASVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKDYEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVTPPEVPNDMNKIRSRVLLPKLSKTDRDQPYQLRTHHFEYF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01545 484 Gene3D Transferase(Phosphotransferase) domain 1 178 247 - -
Phco8g01545 484 FunFam serine/threonine-protein kinase D6PK-like 321 451 - -
Phco8g01545 484 Pfam Protein kinase domain 322 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01545 484 Pfam Protein kinase domain 94 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01545 484 SMART serkin_6 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01545 484 FunFam protein kinase PINOID 178 246 - -
Phco8g01545 484 CDD STKc_phototropin_like 92 450 - -
Phco8g01545 484 ProSiteProfiles Protein kinase domain profile. 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01545 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Phco8g01545 484 Gene3D Transferase(Phosphotransferase) domain 1 320 451 - -
Phco8g01545 484 Gene3D Phosphorylase Kinase; domain 1 91 177 - -
Phco8g01545 484 MobiDBLite consensus disorder prediction 1 32 - -
Phco8g01545 484 FunFam protein kinase PINOID 2 91 177 - -
Phco8g01545 484 PANTHER FLIPPASE KINASE 1-RELATED 43 454 - -
Phco8g01545 484 Coils Coil 126 146 - -
Phco8g01545 484 SUPERFAMILY Protein kinase-like (PK-like) 75 456 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01545 Phco-Chr8 15912692 15914544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco8g01545 Pkinase 1.3e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01545 8 15912692 15914544 Phco8g01545 8 15912692 15914544 ECH
Phco8g01545 8 15912692 15914544 Phco7g02370 7 41463548 41468383 PCT