Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01512 ATGGTGTGGTTAGATTTATATATCTACGATTATCTCATGAAGAGACAATTGCATGCTACTGCAAGAGTATTTCAGGCCGAAGGAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTAGTGGTTTTCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCCGGGCAAATCAGAAGCACACAGAAGCAGCAGCATCTTACAGTAAGAATCAACAAATTAAAGCTCGATTAATTCAACAAGAACAAGAGTTTCAGAATACAAACCAGAATCAACAAACACAAATGCAACTCTTATTGCAAAGACGTGCTCAGCAGCAGCGTCTGGGTGGAACTCAACTTATTAGTGGCAGTGCTTGCTGTCCTATCATCAATGATCCTTTAATAAGGCAGAACCGGGCAGCTCCTAATGCTATGGCAACAAAATTATACGAGGACAGGTTGAAGCTTCCATGTCAGAGAGATGCTTCAGAAGATGCAAACATTAAGCAGAAGATAGCTGATGACGTTGGTAGGCTTCTAAACCCAAACCATGCAGTATTATTGAAAGCAGCAGGAACATCTGGTGAAATGGCTTCAGGGCAGACTCTGTTCAGTGCTCCTCCTTGCATTTTACCTGGGAATATTCAACATGTTCAAAATCTGAACCAGAAGCTTCTAGGGTCTACACAAGATGTGAAGAGTGAGATGAATGCATTGCTGGGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATTGGTTGTCAAGGTTCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTAGATGAACTTCGTTCTGGCATTCTCCAGCCAAATAATTTGATGCACTCTCCACAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGCTTCTGGCACAACAAAATTTAATTTCTCCTCCTGTCAGTGATATCGAGAGCAGAAGACTCGGGATGTTTTGTAATGATCGAAACATGAGTCTTGTGAAAGATGGCCAATCAAATTCTGTAGATGATTTAGTTCTGAGTAATGGATCACCTGCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAGCTTCAACAATATTCTCAACTTCCTCTTCCAAGCCAACCGTGTGAGAATCTCCAGCAGCATGAAAAAATTGGTCGTGGTCCTGGAAGCATGACTAAAGAGGGAAATGTGTCCAATTCCTTACAAGCAAACGATCAGGCTCCAAAAACTAAATTAGGGCGAAAGCGAAAATCAGCATCGTCTTCAGGTCCTGGCATTAGCTCTGGAACTGCAAATACCACCGGACCACCTGCCAGTTCACCTTCAACACCATCTACCCAAACACCTGGAGAGATGATAACAGTGTCAACTCCGCAACAGAATGCTCCTTCCTCTAAGTCAGCATTTATGTTTGGTACTGATGGTTTGGGCTCACTTACATCATCACAAAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATATTGACTCATTCGTATCTCCTGATGATACAGACATTGGAGAAAAAGTTGGCAAAGGATTCTTTTTCAAGGAGATCAAGCATATAATGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTCTCGTCGGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTATTTAACCAGACATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCCAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATTCAAGTTATTCTCTTCGAACATTCACTGGACATGCTACAACTGTGACTTCTCTAGATTTTCACCCTAGAAAAGATGACCTTATTTGCTCATGTGACAGCAGTGAGATAAGATACTGGAGTATAAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGTTTCGGAAGGCTTCTTGCAGCTGCCGTAGATAATTTCGTATCCATTTTCGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGCTTCAAATGTACGGCAAGATCACAATATTGGATGTTTCCTTCGATTATAAGTTCAACGAGTTCCAGGCACTTACTGAATTCATGATAGTTGGTGAAAATCTTTTTTTAGATTTGCGATGTTGTTTTGGAGGTTGGAAAGTTGTGGCTGTTATGGTGGTGCCTGCATTTGATGGCATTATACATATGAGATATCTTATGGGGTTTGGTGGGGGTGGTGAAAGAGAAAATGGAGGAGTTGATGGTGTGGTGGGCCATAATAATGTTGTGCGTTCTGTGTGCTGGGATTCGTCTGGAAAATATCTGGCTTCTCTTAGTGATGATCTGGTTAGAGTATGGAATGTTGGATCTGGCGGCAAAGGGGAATGCATTCACGAGTTTGCTGCATCTGGGAACAAATTCAACACCTGTGTTTTCCATTCCTTCTATCCTTTGTTGGTCATTGGCTGCAACAAGACTATTGAGGTGTGGGACTACGGTCAGAACAAGACATTGACTATGCATGCACACGAAAAGGCTGTATCTTCCTTGGCAGTATCAAATGTTACTGGGTTTCTGGCTTCAACTAGTCATGACAAACATTTCAAGATCTGGAAGTGA 2709 0.4223 MVWLDLYIYDYLMKRQLHATARVFQAEGNVSTGPVVIEAPSGFLLEWWSVFWDIYIARANQKHTEAAASYSKNQQIKARLIQQEQEFQNTNQNQQTQMQLLLQRRAQQQRLGGTQLISGSACCPIINDPLIRQNRAAPNAMATKLYEDRLKLPCQRDASEDANIKQKIADDVGRLLNPNHAVLLKAAGTSGEMASGQTLFSAPPCILPGNIQHVQNLNQKLLGSTQDVKSEMNALLGSQAVVSEGSFIGCQGSNPGGSNLTLKGWPLAGLDELRSGILQPNNLMHSPQSFNQLSLRQQLMLLAQQNLISPPVSDIESRRLGMFCNDRNMSLVKDGQSNSVDDLVLSNGSPAQVGSPMLPHPDSDVFFKQLQQYSQLPLPSQPCENLQQHEKIGRGPGSMTKEGNVSNSLQANDQAPKTKLGRKRKSASSSGPGISSGTANTTGPPASSPSTPSTQTPGEMITVSTPQQNAPSSKSAFMFGTDGLGSLTSSQNQLADMDHLVGDGCLGDNIDSFVSPDDTDIGEKVGKGFFFKEIKHIMASSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQTSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNSSYSLRTFTGHATTVTSLDFHPRKDDLICSCDSSEIRYWSIKNGSCTGVFKGGATQMRFQPCFGRLLAAAVDNFVSIFDVETLGCRLKLQLQMYGKITILDVSFDYKFNEFQALTEFMIVGENLFLDLRCCFGGWKVVAVMVVPAFDGIIHMRYLMGFGGGGERENGGVDGVVGHNNVVRSVCWDSSGKYLASLSDDLVRVWNVGSGGKGECIHEFAASGNKFNTCVFHSFYPLLVIGCNKTIEVWDYGQNKTLTMHAHEKAVSSLAVSNVTGFLASTSHDKHFKIWK 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01512 902 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 870 902 - -
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 902 IPR001680 GO:0005515
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 568 IPR001680 GO:0005515
Phco8g01512 902 PANTHER TRANSCRIPTION ACTIVATOR MSS11 371 704 - -
Phco8g01512 902 SUPERFAMILY WD40 repeat-like 542 902 IPR036322 GO:0005515
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Phco8g01512 902 Gene3D - 779 902 IPR015943 GO:0005515
Phco8g01512 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 32 IPR006594 GO:0005515
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
Phco8g01512 902 MobiDBLite consensus disorder prediction 388 475 - -
Phco8g01512 902 Pfam LisH 4 28 IPR006594 GO:0005515
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 614 - -
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 659 - -
Phco8g01512 902 Coils Coil 73 97 - -
Phco8g01512 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 568 - -
Phco8g01512 902 Gene3D - 531 748 IPR015943 GO:0005515
Phco8g01512 902 MobiDBLite consensus disorder prediction 400 415 - -
Phco8g01512 902 MobiDBLite consensus disorder prediction 428 475 - -
Phco8g01512 902 CDD WD40 533 902 - -
Phco8g01512 902 Pfam WD domain, G-beta repeat 787 817 IPR001680 GO:0005515
Phco8g01512 902 Pfam WD domain, G-beta repeat 540 568 IPR001680 GO:0005515
Phco8g01512 902 Pfam WD domain, G-beta repeat 867 902 IPR001680 GO:0005515
Phco8g01512 902 Pfam WD domain, G-beta repeat 575 611 IPR001680 GO:0005515
Phco8g01512 902 Pfam WD domain, G-beta repeat 619 653 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 780 817 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 530 569 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 572 611 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 615 654 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 657 693 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 823 861 IPR001680 GO:0005515
Phco8g01512 902 SMART WD40_4 863 902 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01512 Phco-Chr8 15553413 15567123 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phco8g01512 WD40 0.012 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01512 8 15553413 15567123 Phco8g01512 8 15553413 15567123 ECH