Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01496 ATGTCATCAAGTGGAACCCTTTGGAGCTATGAGGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAAGCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAGCATTACCAGGTTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATACCATTTCCCAACTATGCTTCTGAGGAAACCACATCTTCAAATAAGGACTTCCATGGCTCTTCCAAGGCCACAAGTTCAGATAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGATTAGGCCATGACTCCACCACTCACAGTAGTGGCAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCGTGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACACAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGGGACAGAAGGAGGTCTAGTATCCATGATATAACTAGTGTGAACAATGGAGATGTGGCTAGTAGTCAAGCACCAATTACAGGGCAGCATAGTAGCGCAGTTTCTTCAAGTACAATGGGTGTAGGACAATCACTGAAGCATAGAGTCCAGGGTCATATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGTCATCCTGTGGCTGCTCCTCCAGGGCATATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACTCTCATCCCCATCCCCACCCCCATGCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCACCAATGCATCAATAA 924 0.4524 MSSSGTLWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPSKSMEEVKQHYQVLVEDVSAIEAGHIPFPNYASEETTSSNKDFHGSSKATSSDKRSNCNYGSGFSGLGHDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASSQAPITGQHSSAVSSSTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHSHPHPHPHAHPHPPYVLPLAYPMAPPPMHQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01496 307 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Phco8g01496 307 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Phco8g01496 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Phco8g01496 307 MobiDBLite consensus disorder prediction 201 224 - -
Phco8g01496 307 CDD SANT 8 56 IPR001005 -
Phco8g01496 307 SMART sant 132 182 IPR001005 -
Phco8g01496 307 SMART sant 4 58 IPR001005 -
Phco8g01496 307 FunFam Transcription factor SRM1 1 69 - -
Phco8g01496 307 Gene3D - 1 69 - -
Phco8g01496 307 FunFam transcription factor MYB1R1 134 185 - -
Phco8g01496 307 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Phco8g01496 307 MobiDBLite consensus disorder prediction 73 123 - -
Phco8g01496 307 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Phco8g01496 307 CDD SANT 135 180 IPR001005 -
Phco8g01496 307 Gene3D - 134 186 - -
Phco8g01496 307 PANTHER TRANSCRIPTION FACTOR KUA1 4 300 - -
Phco8g01496 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Phco8g01496 307 MobiDBLite consensus disorder prediction 73 134 - -
Phco8g01496 307 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Phco8g01496 307 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Phco8g01496 307 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Phco8g01496 307 ProSiteProfiles SANT domain profile. 1 52 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01496 Phco-Chr8 15394261 15395389 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g01496 Myb_DNA-binding 1.6e-06 CL0123