Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01450 ATGGGGTGCTCATTCTCCGGTTTAAACGCGCTCTACGACTCCGTTAACAACGGAGGCGATGCGTGGATCAATGAGAATCGTTTCCGCATCGTGCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGCTTATCAACGACTCTGCCGCCAGTGGCCTTGCCAACAAGCTCAAAGACTCCTCTCATGTCTCCGAGGATGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTCAGTCATCCCAATTTGCTCCCACTTCTTGATCATGCAATCATTTCTGTCAAGCCTACACAAGAAACGTCTTGGAACCATGAAGCATACTTGCTATTTCCAGTTCATATGGATGGAACATTGCTAGACAATGCCAAAGTAATGAAAACCAAGAAGGAATTCTATTCCACCGCAGATGTTCTTCAAATCTTTCATCAGCTTTGTGCAGGACTCAAGCACATGCACAGCTTTGATCCTCCTTATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGACAACCACCACTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCGAATTACCAACAGATCAGAGGCACTCCAGTTACAGGAGTGGGCATCTGAGCACTGCTCTGCACCTTTCAGAGCTCCTGAGCTGTGGGATTGTCCAAGCCAAGCTGATATAGATGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCCCTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATTGTCAGATCAAATGGCCAGCTGGGCCTAAGCCTCCATATCCAGAAGCTTTTCACCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGAGGCCCAGGATAGATGATATCATTATCCATGTGGATAAGTTGATTGCAAAGTTCTCGCAATGA 1029 0.4674 MGCSFSGLNALYDSVNNGGDAWINENRFRIVRQLGEGGFAYVYLVKELINDSAASGLANKLKDSSHVSEDGTYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHMDGTLLDNAKVMKTKKEFYSTADVLQIFHQLCAGLKHMHSFDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKRITNRSEALQLQEWASEHCSAPFRAPELWDCPSQADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNCQIKWPAGPKPPYPEAFHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01450 342 Pfam Protein kinase domain 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01450 342 CDD STKc_16 27 338 - -
Phco8g01450 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Phco8g01450 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Phco8g01450 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01450 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Phco8g01450 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01450 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01450 Phco-Chr8 14982402 14988600 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Phco8g01450 Pkinase 5.2e-30 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01450 8 14982402 14988600 Phco8g01450 8 14982402 14988600 ECH