LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g01445	ATGGAATGCAATGAAGATGATGAACTCCATGTAGCCCCTTATGCTTCCTTAACACAGTGCTTTCGCTATCTTTCTCCAACCCAGAAAGCTATCCTGACCTCAACAATGGAAACTGGTGAAGGCCATACTTTGACCCATCTGGATCAACCTCATAGTTTACACCATATTCCTTTTTTCTGCTCCCAATTGCACTTTCCAAGCAACAGCCACAACCCAATTCAAGTCCCACTCCATAAATCCTCTCCCAACACATCATCAAATAGTAACAACAATAACAATTCTGATGAAGCAAAGGCTCTCCTTGATGACAGAAAGAAGAAGAGGATGTTCTCCAACAGAGAATCTGCTCGCAGGTCTCGCATGCGAAAGAAGCAACAGATTGAACTCCTGCAGTATCATGTGGATCATCTGCAGACACTAAACCATCAACTGTCCGAAAAGATCATTTACTTGCTGGAATGTAACCAACAAATCCACCAACAGAATGCTCAGCTAAAAGAGAAAGTTTCCTCTCTTCAGGTAGCACTCTCTGAGTTGTTGGTTCCTGCAGGAGGTGCCGAGCAACCACACCACATTCCTAATGGCTTCCTAGTCGAGCCTTCAACTAGAGCAAATGCAAGTTCCAGAGCATAG	633	0.4408	MECNEDDELHVAPYASLTQCFRYLSPTQKAILTSTMETGEGHTLTHLDQPHSLHHIPFFCSQLHFPSNSHNPIQVPLHKSSPNTSSNSNNNNNSDEAKALLDDRKKKRMFSNRESARRSRMRKKQQIELLQYHVDHLQTLNHQLSEKIIYLLECNQQIHQQNAQLKEKVSSLQVALSELLVPAGGAEQPHHIPNGFLVEPSTRANASSRA	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g01445	210	CDD	bZIP_plant_GBF1	105	153	IPR045314	GO:0003700\|GO:0006355
	Phco8g01445	210	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	102	165	IPR004827	GO:0003700\|GO:0006355
	Phco8g01445	210	FunFam	BZIP transcription factor	102	153	-	-
	Phco8g01445	210	MobiDBLite	consensus disorder prediction	71	96	-	-
	Phco8g01445	210	Gene3D	-	103	157	-	-
	Phco8g01445	210	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	107	122	IPR004827	GO:0003700\|GO:0006355
	Phco8g01445	210	Coils	Coil	155	175	-	-
	Phco8g01445	210	SUPERFAMILY	Leucine zipper domain	104	155	IPR046347	GO:0003700\|GO:0006355
	Phco8g01445	210	SMART	brlzneu	100	164	IPR004827	GO:0003700\|GO:0006355
	Phco8g01445	210	MobiDBLite	consensus disorder prediction	97	121	-	-
	Phco8g01445	210	MobiDBLite	consensus disorder prediction	71	121	-	-
	Phco8g01445	210	Pfam	bZIP transcription factor	103	162	IPR004827	GO:0003700\|GO:0006355
	Phco8g01445	210	PANTHER	BASIC LEUCINE ZIPPER 43-RELATED	23	186	IPR044521	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g01445	Phco-Chr8	14931365	14931997	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Phco8g01445		bZIP_1	1.1e-12	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g02438	7	42533091	42533453	Phco8g01445	8	14931365	14931997	PCT