Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01442 ATGGGATCGTCGTCGGCGTCGTTGAGTTCTCCAATGAAGAGAGTGAGATCCCAAGAAGAGGAGGATGAGGACGAGGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGGGCGAGGGGTTTCCATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTATGCATCATGGAATGGTCCAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTTTCCAACGTTCGCAGGCTCCCTATGCACGGCGTCTTTTCTTCCTCTCGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTTATGGAAATGTGGCAATTGGTCCTGTCAATTCCTATGCTGAAACCAAATGTGGTGTTTGTCTTGCTGGGACAGATGAACATCTTCTGCTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGTCAGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGACCAATGCCAATGAAGAATCAGAACTACAAAATGTTGTGCCAGAGGCTGAACCAAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTAGTTAAAAGACCAAGGACATCTCCTTTACAGCAGAACGTGTTATCTCCTTCTGCTATTCCTTTATCAGACAGGTTAAGCAGATTCAAAGGAAAAATTCCTGCCACAGGTGTCCATAGTATGCAGCGTAATATACAGGCATTTCGTGACAACTGGAATGCTTTGAGGAGTGGTTCATTACAGTTCCATTGTAATACGGATCAACCTAGCAGTAAAGTTAGTCAAAAGCAAGATTCTAGATCCTTATCACATGGCAAATTATATGATTCACATTCTAGGGCTTCCACAAGCGTGCAACAATCCACTGTCCAAGGTGGTCCTACTAACAAAACTTTGAATGAGAGAGTCTATAAAGATGATGCTGACAAGGCTTGGAAAATGGTGGACAGGGCAAAGAGTATGCTACTGACTCGTCAAAGAACTAGCAGCAATCGGCAGGGAGTAGATAGACCCTCATGCAGTGGAGGAGCTTGTAAAACATCAGTTGAACATTGTAATTTCCCAGAACTAAAAGATCAACATTTGAAAGCATTAGACTTAAGGAACACTAAGAAAGAGAAGGAGTGTGACTATTCTAGACGTGTCCAGAATTTCAAAAATTGCTCGACCCTAAAGTTGGAAGAGAAAATGAAAAGTAGGGTTAGATGTGAGGAGATGATACACCGTGTGAGGGACCATACTACTCATTCAGAAGGATATTGTGAAAGTTCATTGTCCAGAAAGGTACCTACTAATATCCAGGGTGGTGTTCCTTGTGGTGAAGAAGAGAGAAATGCTTGCCAGGTAACTTCGGCAGATTTAGCTTCCTCGAGTGGCAAGTTTGTTAGTGTGCTCTCCTCTTGTAGGGACGTGGATCTTGTCAATGGAGAAAAGATATTAGCTAGAAGTTGCGAGGATGGAAGCACAAGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTGACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTTTGCTGTCATTCCGACAATACCCCCCAGTTTCAGAAATCTACTTTAATGCCTAACTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAATGTTGTCAGCTCCACCATGATGGAGAAAGGTTGCGCTTGA 1830 0.4432 MGSSSASLSSPMKRVRSQEEEDEDEEESVCCGICYAGRGVSIAGEIDCCSHYFCFVCIMEWSKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPYGNVAIGPVNSYAETKCGVCLAGTDEHLLLLCDLCDTASHTYCVGQGYTVPEGDWFCHDCAISRETNANEESELQNVVPEAEPSETVDIFDIVRETGSRVVKRPRTSPLQQNVLSPSAIPLSDRLSRFKGKIPATGVHSMQRNIQAFRDNWNALRSGSLQFHCNTDQPSSKVSQKQDSRSLSHGKLYDSHSRASTSVQQSTVQGGPTNKTLNERVYKDDADKAWKMVDRAKSMLLTRQRTSSNRQGVDRPSCSGGACKTSVEHCNFPELKDQHLKALDLRNTKKEKECDYSRRVQNFKNCSTLKLEEKMKSRVRCEEMIHRVRDHTTHSEGYCESSLSRKVPTNIQGGVPCGEEERNACQVTSADLASSSGKFVSVLSSCRDVDLVNGEKILARSCEDGSTRKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMMEKGCA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01442 609 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Phco8g01442 609 MobiDBLite consensus disorder prediction 267 284 - -
Phco8g01442 609 SUPERFAMILY RING/U-box 17 79 - -
Phco8g01442 609 SMART ring_2 31 71 IPR001841 -
Phco8g01442 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 95 IPR013083 -
Phco8g01442 609 Pfam PHD-finger 121 165 IPR019787 -
Phco8g01442 609 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Phco8g01442 609 SMART PHD_3 120 165 IPR001965 -
Phco8g01442 609 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g01442 609 MobiDBLite consensus disorder prediction 291 314 - -
Phco8g01442 609 SUPERFAMILY FYVE/PHD zinc finger 116 169 IPR011011 -
Phco8g01442 609 PANTHER F18C1.6 PROTEIN 19 606 - -
Phco8g01442 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Phco8g01442 609 MobiDBLite consensus disorder prediction 267 315 - -
Phco8g01442 609 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01442 Phco-Chr8 14904174 14910670 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco8g01442 PHD 1e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01442 8 14904174 14910670 Phco8g01442 8 14904174 14910670 ECH